Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8504 897 0.0 seq6779 183 3e-41 seq2002 131 1e-25 seq8412 93.3 4e-14 >seq8504 Length=8995 Score = 897 bits (994), Expect = 0.0 Identities = 1371/1949 (70%), Gaps = 33/1949 (2%) Strand=Plus/Minus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||||||||| |||||||| || || || ||||||| ||||| || ||||| |||||| Sbjct 3130 GTCTTGTCCACCGTAAACTGGATTGCATTCACGGCCGGCTTGGTACGCAGATAGTACATG 3071 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || |||| ||||||||||| |||| ||||| |||||||||| || ||||| | Sbjct 3070 CCAGTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTT 3011 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 ||| | | || | |||||||| || ||||||||||||||| || ||||| ||| Sbjct 3010 GGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGCG 2951 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| || || | || || ||| || |||||||| || |||||||| | | || Sbjct 2950 GCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAATT 2891 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTT--T 22400 || |||||| | | ||| | |||| || || || ||| || ||||| | Sbjct 2890 TCCTGCGGTATAGCCGCTATCTTTTGGATCGATCCATTGTTG-----GACAGAATTTCGT 2836 Query 22401 TAATCGTATCG---TTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCA 22457 | || | ||| | ||||| ||| ||| ||||||||| | | |||||| |||||| Sbjct 2835 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 2776 Query 22458 CCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGA 22517 |||| || |||||||| |||| ||||| | | ||||| ||| || ||| |||| |||| Sbjct 2775 CCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 2716 Query 22518 AAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTA 22577 | ||||||||||| || || || || || || ||||| ||||||||||| |||||||| | Sbjct 2715 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCA 2656 Query 22578 GCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637 |||| || | | ||||||||| | || || ||| | | | ||||| |||||||| Sbjct 2655 GCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 2596 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGC 22697 | || || | |||| |||||| ||||| |||| | ||| ||| ||||||||| Sbjct 2595 C---CGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGGCTGC 2539 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 | |||||||| ||||||||||||| | ||||| || || |||||||| |||| |||| Sbjct 2538 CCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAGCTCACAGCTCGCTTCCAGTGCGC 2479 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 |||| || || || ||||| |||| || || | | || | |||||||||||| Sbjct 2478 CGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG 2419 Query 22818 GCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGG 22876 | ||| ||||||| | |||||| || ||||| ||||| ||||| || |||||||||| | Sbjct 2418 G-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATGCCGATCGGTCTG 2360 Query 22877 TTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTG 22936 | || ||| || || ||||| |||| ||||| |||| ||| || || || Sbjct 2359 TGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTG 2300 Query 22937 TTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCC 22996 |||| || | ||||| | || | | ||||||| || Sbjct 2299 TTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTG 2240 Query 22997 GATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCT 23056 ||| |||||| |||| | |||||||||||| ||||||||||| || ||||| || Sbjct 2239 TCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATCC 2180 Query 23057 TTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 || |||| |||||| ||||| || || || || ||| ||| || || ||||| | ||| Sbjct 2179 TTCGACGAGTACTCCACAATCTCAGTGCACAGGTTGGAACATTTGATGGTGCCGATATTC 2120 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||| ||||| |||||||| | ||||||||| ||||||||||| ||| || || Sbjct 2119 TGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCC 2060 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 |||||||| ||||||||||| ||||| | ||| || | || | |||| | | Sbjct 2059 ACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGA 2000 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || |||| ||||||| ||||| | || || || | || | ||| | || Sbjct 1999 CCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGC 1940 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | ||| ||||| || ||||||||| || || || || ||| Sbjct 1939 CCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTGCATG 1880 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || ||||||||||| || ||||| |||| || || ||||| |||||||| |||||| Sbjct 1879 AACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCG 1820 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||| || |||| ||| | ||| || || | || ||||||||||||| || || | | Sbjct 1819 GTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCACGGCTCAAGATAGATG 1760 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| ||||| |||||||||||||| || ||||| |||||||| Sbjct 1759 GCGAATGCTCCGGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAG 1700 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAAC 23594 || | ||||||||||| |||||||| || ||| | || || | | || | Sbjct 1699 ACGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGTTCGTA--CCGGAGATGTACGTTC 1642 Query 23595 CTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCG 23654 | || || || | ||| |||| | || ||||| ||| |||||||||| || | | Sbjct 1641 CCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGATTTCGAAATTAGAG 1582 Query 23655 CGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC---TTTGGTCGCGACCA 23711 | || || ||||| ||||||||||||||||| ||||| || || ||||| | || Sbjct 1581 CACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTC---AACA 1525 Query 23712 AGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 ||| || || || | || |||| ||||||| || | |||| || || | Sbjct 1524 GGAAGCAGGACGAAAGCTGGGGACGCT----GCGTAGCCGCAGCAAACATGGTTGGCGAG 1469 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 ||||| || ||||| | | |||| |||||||| || ||||| || ||||| |||||| Sbjct 1468 GCGTGGGTGAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCC 1409 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 || || || || || ||||| |||||||||| ||||| || || | |||||| | Sbjct 1408 TCGCCATGGATGCCAATGGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTT 1349 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 || || || || | || ||||| |||| || |||||||| || ||||||| || Sbjct 1348 CCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTGTACCCG 1289 Query 23948 AAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTG 24007 ||||| ||||||| | |||||||| |||| |||| || || | || | ||| Sbjct 1288 AAGTCGCGATCGTAAATAATGGCCGAGTTCAGCCGGTCGGCGTTATCCATTATCACCTTG 1229 Query 24008 TAATGAAAATTCGATATCATCGGCGTTTT 24036 |||||||| | ||| ||||| || | ||| Sbjct 1228 TAATGAAAGTCCGAGATCATGGGAGATTT 1200 >seq6779 Length=15061 Score = 183 bits (202), Expect = 3e-41 Identities = 300/430 (70%), Gaps = 2/430 (0%) Strand=Plus/Plus Query 57879 CTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAA 57937 |||||||| || |||||||| |||| ||| | | |||||| || ||| | | || Sbjct 2972 CTGTTCAATGCCATCGAAACGCTGCCGTGCG-TGAAGAGGAAGGCGGACTGGGCGCTGAA 3030 Query 57938 ATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGA 57997 ||||| ||| | ||||| || | |||| || | | || ||||| || || || Sbjct 3031 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGA 3090 Query 57998 AGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGAT 58057 ||||| ||||| || ||||| || || || || ||| ||||||| || |||||||| Sbjct 3091 GGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGAT 3150 Query 58058 GCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTT 58117 ||| || || || || |||||| |||| ||||||||||| || || || || || Sbjct 3151 GCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTT 3210 Query 58118 TGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACAT 58177 ||| ||||| |||| | | | || | || ||| || ||| ||| | ||| || Sbjct 3211 TGCCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAGAT 3270 Query 58178 TATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCAT 58237 ||| ||| |||||| |||||| | ||||| | || | || || ||||||| || Sbjct 3271 CATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGATAT 3330 Query 58238 GCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTT 58297 ||| || |||||| |||| ||||||| |||||||||||||||| ||||| | | | Sbjct 3331 GCTTGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGTTTGCT 3390 Query 58298 GCTCGAACTG 58307 |||||| ||| Sbjct 3391 GCTCGAGCTG 3400 >seq2002 Length=20453 Score = 131 bits (144), Expect = 1e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| |||||||| || || || || ||||| || ||||| | || || || || Sbjct 18448 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 18507 Query 31249 GTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || |||| |||| | || || || ||| | ||||||||||||| | || || | Sbjct 18508 TTCGGACACGATCGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCAG 18566 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||||||||| || ||||| ||||| ||| |||| || | ||| | ||| | Sbjct 18567 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 18626 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | |||||||| || |||||||| ||||||||||| || |||| | || |||| Sbjct 18627 ACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGTA 18680 >seq8412 Length=7683 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 3783 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3842 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||||||||| || | ||||| || Sbjct 3843 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 3902 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| || || || ||| || Sbjct 3903 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 3962 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || ||||| ||||||||||| || | ||| | || ||| ||||| Sbjct 3963 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGGTGCCAAGAAG 4022 Query 31426 CG 31427 || Sbjct 4023 CG 4024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445653682393680