Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8504 390 1e-103 seq6779 113 6e-20 >seq8504 Length=8995 Score = 390 bits (432), Expect = 1e-103 Identities = 1204/1851 (65%), Gaps = 24/1851 (1%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || ||||| ||||||||||| || ||||| | || | |||| ||||| ||| Sbjct 3097 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAA 3038 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 3037 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 2978 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 2977 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 2918 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTAT--TCTGAATGGAT 62303 || | ||||| || | |||| | | || | | | | ||| | || || ||| Sbjct 2917 CATACCGTTTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCGCTATCTTTTGGATCGAT 2858 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 ||| | || ||| ||||| || || || ||| | | | ||| ||| Sbjct 2857 CCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAA 2798 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 | || ||||| |||| || || ||||| || || |||| || | || | ||||| Sbjct 2797 TCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAA 2738 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 | || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 2737 ACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCC 2678 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 |||||||| || |||| || | ||| | || |||| | ||| || || || Sbjct 2677 GTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTC 2618 Query 62544 AGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATA 62603 | | |||| ||||| ||||||| |||| | || || ||||| Sbjct 2617 AACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATG 2558 Query 62604 CCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTT 62662 || || || | | | ||| | || || || || || || || | || || | Sbjct 2557 CCCTTGCTCACCGGGCTGCCCT-CGTACGTCTCGTACGGACCATCTCGAGCGGCCAGCTC 2499 Query 62663 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTG 62722 ||| ||||| || | ||| ||||| || |||||||| || || | || |||||| | ||| Sbjct 2498 ACAGCTCGCTTCCAGTGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTG 2439 Query 62723 TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAAC 62782 || || ||| || | ||||| | || || ||||| || || | || || || Sbjct 2438 AGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCAC 2379 Query 62783 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62842 || || ||||| ||||| || | | |||| ||| | ||| || || | ||||| || Sbjct 2378 GCCGATGCCGATCGGTCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTA 2319 Query 62843 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 62901 ||| | ||| || ||||| || ||||| | | || | ||| | | || |||||||| | Sbjct 2318 ATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAG-CGACTTCCTTCAGCT 2260 Query 62902 TGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGA 62957 | ||| ||| | | | | || |||||||||||||||| || | || |||||| Sbjct 2259 TTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCCAGA 2201 Query 62958 TTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 || || || |||||||||| | || || || | | ||||||||||| || || Sbjct 2200 TTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAGGTTGG 2143 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 ||| ||||| || || | ||| || || ||||| || || || |||||||| || | Sbjct 2142 AACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACA 2083 Query 63076 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63135 | ||| | || || ||||| | ||| ||||| || ||||| ||| | | | | Sbjct 2082 GCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCG 2023 Query 63136 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACT 63195 |||| | | | | | ||| | ||||| || |||| ||||||| Sbjct 2022 CCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACT 1963 Query 63196 CGTCTCCCCAAACATTGTCCAAT---CTAGGACATTCATCCGGACACATCAACGACCACT 63252 | || ||||| ||||| || | ||||| || | ||| ||||||| |||| Sbjct 1962 CTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACA 1906 Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312 | ||| ||| ||| || | ||| || || || || ||||| || || ||| | | Sbjct 1905 TTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGT 1846 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 | | || | ||||| || || || || || || |||||||| ||| | | |||| Sbjct 1845 CCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATAT 1786 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | ||||||||| || | || ||||| | |||| ||||| ||||| || ||||||| Sbjct 1785 CGCCATGCCACGGCTCAAGATAGATGGCGAATGCTCCGGGCCGCTTGTTGCCACCCTGAT 1726 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | ||| | || || || || || || | || ||| || | | |||||| || || | Sbjct 1725 CGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAATCC 1666 Query 63493 CATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCTATT 63551 | || ||||||||||| || ||| | || || ||| | | | | || || || Sbjct 1665 CGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCCGATG 1607 Query 63552 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATG 63611 || || ||| ||| || |||| || || | || | |||||| |||||||| || ||| Sbjct 1606 CCACCGGCCGATTTCGAAATTAGAGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATG 1547 Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 ||||| ||| |||| | | || || ||| || | ||| |||| || ||||| Sbjct 1546 CTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTAGCCGCA 1487 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 ||| | ||| || || ||||| || || | || || || |||||||| ||||| Sbjct 1486 GCAAACATGGTTGGCGAGGCGTGGGTGAAGTAACGCTCGGACAGCAGATTGTAGGTCTCG 1427 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 || |||| || || ||| ||| || || | || || ||||| | ||||||||| Sbjct 1426 ATCGCTGCATCGATGTCCTCGCCATGGATGCCAATGGCAACGCGCATCAGCATGTGCTGG 1367 Query 63792 GGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63851 || | || || ||||| || || |||| |||||| ||| |||||| |||||||| Sbjct 1366 GGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAG 1307 Query 63852 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || ||||||||||| ||||| || ||||||||||| |||| || ||| Sbjct 1306 CCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATAATGGCCGAGTTCAGC 1256 >seq6779 Length=15061 Score = 113 bits (124), Expect = 6e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || || || ||||||||||| || ||||| | || | ||||| Sbjct 3228 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 3169 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 3168 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 3109 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 3108 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 3050 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | ||||| || |||||| | || || || |||| || Sbjct 3049 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCG 2991 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 2990 TTTCGATGGCATTGAACAG 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629658342747120