Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8504 403 2e-107 seq6779 113 6e-20 >seq8504 Length=8995 Score = 403 bits (446), Expect = 2e-107 Identities = 1209/1852 (65%), Gaps = 28/1852 (2%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || || ||||| ||||||||||| || ||||| | || | |||| ||||| ||| Sbjct 3097 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAA 3038 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 3037 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 2978 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 2977 TGATCGATAAACGCGCCACGATCTGCGGCCATTTTGATGCACGTTTTCACCGAGATCTCC 2918 Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTAT--TCTGAATGGAT 62252 || | ||||| || | |||| | | || | | | | ||| | || || ||| Sbjct 2917 CATACCGTTTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCGCTATCTTTTGGATCGAT 2858 Query 62253 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62312 ||| | | || ||| ||||| || || || ||| | | | ||| ||| Sbjct 2857 CCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAA 2798 Query 62313 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 62372 | || ||||| | || || || || || || || |||| || | || | ||||| Sbjct 2797 TCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAA 2738 Query 62373 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62432 | || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 2737 ACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCC 2678 Query 62433 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62492 |||||||| || |||| || | ||| | || |||| | ||| || || || Sbjct 2677 GTCGGCATCGGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTC 2618 Query 62493 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 62552 | |||| ||||| ||||||| |||| | || ||||| Sbjct 2617 AACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATG 2558 Query 62553 CCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTC 62611 || || || | | | ||| | || || ||||| || || || | || || || Sbjct 2557 CCCTTGCTCACCGGGCTGCCCT-CGTACGTCTCGTACGGACCATCTCGAGCGGCCAGCTC 2499 Query 62612 ACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG 62671 ||| ||||| || | ||| ||||| || ||||||||||| || | || |||||| | ||| Sbjct 2498 ACAGCTCGCTTCCAGTGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTG 2439 Query 62672 TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAAC 62731 || || ||| || | ||||| | || || ||||| || || | || || || Sbjct 2438 AGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCAC 2379 Query 62732 ACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATA 62791 || || ||||| ||||| || | | |||| ||| | ||| || || | ||||| || Sbjct 2378 GCCGATGCCGATCGGTCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTA 2319 Query 62792 ATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGTT 62850 ||| | ||| || ||||| || ||||| | | || | ||| | | || |||||||| | Sbjct 2318 ATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAG-CGACTTCCTTCAGCT 2260 Query 62851 TGAGAAAATCAAA----TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGA 62906 | ||| ||| | | | | || ||||||||||||||||||| | || |||||| Sbjct 2259 TTGCAAAGTCATACGTTTTGTCTTGCT-TTACAAACATGTTCAAGGCGATCGAGGCCAGA 2201 Query 62907 TTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 62964 || || || |||||||||| | || || || | | ||||||||||| || || Sbjct 2200 TTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAGGTTGG 2143 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 ||| ||||| || || | ||| || || ||||| || || || |||||||| || | Sbjct 2142 AACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACA 2083 Query 63025 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63084 | ||| | || || ||||| | ||| ||||| || ||||| ||| | | | | Sbjct 2082 GCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCG 2023 Query 63085 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 63144 |||| | | | | | ||| | ||||| || |||| ||||||| Sbjct 2022 CCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACT 1963 Query 63145 CGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCACT 63201 | || ||||| ||||| || || ||||| || | ||| ||||||| |||| Sbjct 1962 CTTCGCCCCAGG---TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACA 1906 Query 63202 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63261 | ||| ||| ||| || | ||| || || || || ||||| || || |||| | || Sbjct 1905 TTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCG-TAAA-ACAT 1848 Query 63262 CTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63319 || || | | ||||| || || || || || || |||||||| ||| | | || Sbjct 1847 GTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATAT 1788 Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63379 ||| ||||||||| || | || ||||| | |||| ||||| ||||| || ||||| Sbjct 1787 ATCGCCATGCCACGGCTCAAGATAGATGGCGAATGCTCCGGGCCGCTTGTTGCCACCCTG 1728 Query 63380 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63439 ||| | ||| | || || || || || || | || ||| || | | |||||| || || Sbjct 1727 ATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAAT 1668 Query 63440 ACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACCTA 63498 || || ||||||||||| || |||| | || || ||| | | | | || || | Sbjct 1667 CCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCCGA 1609 Query 63499 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTA 63558 | || || ||| ||| || |||| || || | || | |||||| ||||| ||||| | Sbjct 1608 TGCCACCGGCCGATTTCGAAATTAGAGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAA 1549 Query 63559 TGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63618 ||||||| ||| |||| | | || || ||| || | ||| |||| || ||| Sbjct 1548 TGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTAGCCG 1489 Query 63619 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63678 || ||| | ||| || || ||||| || || | || || || |||||||| |||| Sbjct 1488 CAGCAAACATGGTTGGCGAGGCGTGGGTGAAGTAACGCTCGGACAGCAGATTGTAGGTCT 1429 Query 63679 CAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63738 | || |||| || || ||| ||| || || | || || ||||| | |||||||| Sbjct 1428 CGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATGGCAACGCGCATCAGCATGTGCT 1369 Query 63739 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63798 | || | || ||||| || || || |||| |||||| ||| |||||| ||||||| Sbjct 1368 GGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAA 1309 Query 63799 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || ||||||||||| ||||| || ||||||||||| ||||||| || Sbjct 1308 AGCCGAAATAGTTGTACCCGAAGTCGCGATCGTAAATAATGGCCGAGTTCAG 1257 >seq6779 Length=15061 Score = 113 bits (124), Expect = 6e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || ||||||| || || || ||||||||||| || ||||| | || || ||||| Sbjct 3228 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 3169 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 3168 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 3109 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 3108 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 3050 Query 33472 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 || || || ||||| || | ||||| || |||||| | || || || |||| || Sbjct 3049 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCG 2991 Query 33527 TTTCTATGGCATTAAAGAG 33545 |||| |||||||| || || Sbjct 2990 TTTCGATGGCATTGAACAG 2972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622789680013640