Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8504 241 1e-58 seq2002 131 1e-25 seq8412 123 2e-23 >seq8504 Length=8995 Score = 241 bits (266), Expect = 1e-58 Identities = 951/1478 (64%), Gaps = 40/1478 (3%) Strand=Plus/Minus Query 128775 CGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACAT 128834 || ||||||||| ||||| | || || | | | ||||||||||| |||| ||||||||| Sbjct 3131 CGTCTTGTCCACCGTAAACTGGATTGCATTCACGGCCGGCTTGGTACGCAGATAGTACAT 3072 Query 128835 GCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT 128894 ||| |||||||| || | ||||| || | || |||| |||| | | ||| | Sbjct 3071 GCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATAGTT 3012 Query 128895 GGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGC 128954 || | | ||| || || ||||| ||||| ||||| | ||| ||||| || Sbjct 3011 TGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCGCCACGATCTGC 2952 Query 128955 AGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCAC 129014 ||||| || | ||||||| || ||||| ||||||||||| || || | | Sbjct 2951 GGCCATTTTGATGCACGTTTTCACCGAGATCTCCCATACCGTTTTGTACAGGTCGCGAAT 2892 Query 129015 GTGTTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTC 129073 | | ||||| | | || || || | || | || ||||| | | ||||| ||| Sbjct 2891 TTCCTGCGGTATAGCCGCTATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCT 2833 Query 129074 GCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAG-TATTTGTTTATT 129132 ||| | | ||| | || ||| ||||||| | | ||| | | ||| | Sbjct 2832 TCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCT-GCAGAAGATGATGGTTCACC 2774 Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || || |||| || ||||||| | ||||| ||| ||| ||||||| ||| Sbjct 2773 ACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAAC 2714 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGC 129252 |||||||||||||| | ||||| ||||| | || || ||||| |||| ||| Sbjct 2713 GATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGC 2654 Query 129253 GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT 129312 || || || | ||||||| || | || || || | | ||||| ||||| ||| Sbjct 2653 GAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACA--GAT 2596 Query 129313 --GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 || ||| | ||||||| ||||| |||| || ||| || | || ||| Sbjct 2595 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGGCTGCCCT 2536 Query 129371 AGTAGGAATCGTGCACGCCGTA---AGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGC 129427 ||| | |||| | || | ||| |||| || || |||||||||| ||||| Sbjct 2535 CGTACGTCTCGTACGGACCATCTCGAGCG---GCCAGCTCACAGCTCGCTTCCAGTGCGC 2479 Query 129428 CAAAATAAATTGTTTCGGCAAT-TTTGGTGTTCAACACTTTG-GCCTGGTCGCTTTCGTA 129485 | | || || |||||| ||| |||| || | | |||| |||| ||||||||||| Sbjct 2478 CGTAGTAGATGGTTTCG--AATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTA 2421 Query 129486 CGGCATA-CGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTC 129544 ||| ||| |||| || | || | ||||||| || || | || | ||||| |||| Sbjct 2420 CGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATGCCGATCGGTC 2362 Query 129545 GATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTT 129604 || ||||||| | ||| | || ||||||||| |||| || || |||| Sbjct 2361 TGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTT 2302 Query 129605 TGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTAC---T 129661 |||| | ||| ||| | || | || | || | | || |||| | ||| | Sbjct 2301 TGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTTT 2242 Query 129662 CGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCAC 129721 | || | | | ||||| || | |||||||||| |||||| || || Sbjct 2241 TGTCTT----GCTTT--ACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTA 2188 Query 129722 TTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGC 129781 || | || |||||| ||||| || | ||||| || | ||| ||||||| Sbjct 2187 CCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAGGTTGGAACATTTGATGGTGC 2128 Query 129782 CCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGC 129841 | | || || || |||||||| ||||||||||| ||||||| ||||||||| || Sbjct 2127 CGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGC 2068 Query 129842 CCGTTTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTA 129901 | ||||| || |||| ||||| || | ||| || | ||||| | ||| | | Sbjct 2067 CGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA 2008 Query 129902 CAAATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCC----GTGT 129957 ||| || ||||||||| || ||||| | || || ||| ||| |||| Sbjct 2007 TAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGT 1948 Query 129958 ACGGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCG 130017 || | ||| || | || |||| ||||||| ||||||||| | | ||| || Sbjct 1947 CCGAT----AGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCC 1892 Query 130018 ACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTA 130077 || || | ||| |||| || |||| ||| || ||||| |||| || || || Sbjct 1891 ACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCGGACC 1832 Query 130078 TCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGT 130137 ||||| || |||| ||||| || || || ||| | || ||| | |||||||| Sbjct 1831 TCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCACGGC 1772 Query 130138 TCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACG 130194 |||| ||| || || | ||| || ||| ||| || || || || |||| || | Sbjct 1771 TCAAGATAGATGGCGAATGCTCCGGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCC 1712 Query 130195 GCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTT 130232 | |||||||||||| |||| ||| | | ||| ||||| Sbjct 1711 GTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTT 1674 >seq2002 Length=20453 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| ||||| || ||||| | ||||| || || |||| ||||| || || | Sbjct 18448 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 18507 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || ||| || || |||||||| || ||||| || || Sbjct 18508 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 18567 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||||| || || |||||||| ||| | |||||| ||||| ||||||| || Sbjct 18568 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 18627 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || ||||| ||| | ||| | || ||||| | || || ||| Sbjct 18628 CAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGGT 18679 >seq8412 Length=7683 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 3783 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 3842 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || ||||||||||| || || || ||| Sbjct 3843 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 3902 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| |||||| | ||||| ||| Sbjct 3903 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 3962 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | ||| | || |||| ||||||| ||| Sbjct 3963 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGGT 4013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419624519865385