Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq104 199 7e-46 seq8412 152 9e-32 seq2002 150 3e-31 seq1137 84.2 4e-11 >seq104 Length=60934 Score = 199 bits (220), Expect = 7e-46 Identities = 368/537 (69%), Gaps = 2/537 (0%) Strand=Plus/Minus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 |||||| || ||||| |||||| ||| |||||||| |||||||| | ||| | || || Sbjct 1805 CCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCC 1746 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 || |||| | | ||||| ||||||| | || | ||| |||||||| || Sbjct 1745 CAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCCACCGAGCGGGTGATTTTGCG 1686 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 |||||||| |||| || || | || |||||| ||||| |||||||||||||| || Sbjct 1685 CGTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGC 1626 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 ||||||| | || || || || ||||| | || ||||||| | ||||||| ||| Sbjct 1625 GAACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACA 1566 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 |||||||| || || |||| ||| || ||| | || || || | || || || Sbjct 1565 CGCGTACGGCGAGCGGGGATAGAACGGGGTCTTTTCGTTCTGGGGCGTCTCCGCCACCTT 1506 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 ||| | |||||||| |||||||| |||||||| || || | || | Sbjct 1505 GCCGTACAGCTCGGACGTCGATGCCTGGTAGAAGCGGACCGTCCGCTCCTGCCCCACCGT 1446 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || ||||||| || || || || | ||||||| ||||| || ||||| Sbjct 1445 GCGGATAGCATCGAGCAGCCGCAGCGTACCGACCGCATCCACCTCCGCCGTGTACTCGCT 1386 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 || ||||| || | || || |||||||||||| |||| || || | || ||| Sbjct 1385 CAGATCGAACGAAATCTTCACGTGGCTCTGGGCGGCCAGATTGTATATTTCGGACGGGCG 1326 Query 268738 GACCTGCTGCACGATCTTCACGAGGTTCGTTG-AGTCGGTGAGGTCTCCGTAGTGCA 268793 ||||| | ||| ||||| | | || || |||||| | ||| |||||||||| Sbjct 1325 CACCTGGGCAATGATTTTCACCA-GCGCGCTGCTGTCGGTCATGTCGCCGTAGTGCA 1270 >seq8412 Length=7683 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| || || || ||||| || |||||||| || ||||| Sbjct 4012 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3953 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 3952 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 3893 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 3892 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 3833 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 3832 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3786 >seq2002 Length=20453 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || |||| |||| || || || || || || || ||||| || Sbjct 18684 TACTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAG 18625 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 |||||||| || | ||||| || | |||||| |||||||| || || | || || || Sbjct 18624 TCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCT 18565 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||||||||||||||| || ||||||||||| || |||||| ||||| | | Sbjct 18564 GGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGC 18505 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 18504 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18452 >seq1137 Length=29551 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGA--GT-CG 196648 ||||| || |||||||||||||| ||| ||| ||| | || ||| |||| || || || Sbjct 3426 ACGGAGACGTTTGCGATGGGCGTTAACATGCCCGCGCGCACGGTCATCTTTGACAGTACG 3367 Query 196649 CTCGAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATG 196708 | | ||||||||||| || | | ||| | | || ||| ||||| || || ||| Sbjct 3366 CGC---AAGTTCGATGGGCAGGCGTTCCGGCCGCTGCAACCGTCCGAGTACACGCAGATG 3310 Query 196709 GCGGGCCGGGCCGGGCGCCGAGGGTTTGACA 196739 ||||||||||||||||| || || | |||| Sbjct 3309 GCGGGCCGGGCCGGGCGGCGCGGTCTCGACA 3279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921389356255880