Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8504 342 1e-88 seq6779 237 3e-57 >seq8504 Length=8995 Score = 342 bits (378), Expect = 1e-88 Identities = 968/1469 (66%), Gaps = 66/1469 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||| ||||| |||||||||||||| | | ||| | ||| || ||| Sbjct 2780 GTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGG 2721 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||||||| || || || |||||| || |||||||| || | || Sbjct 2720 CTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAA 2661 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| || | | ||||||| | ||| | | |||| ||||| ||| Sbjct 2660 CAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCA 2601 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| | |||| | || |||||| || ||||||| | |||||||| Sbjct 2600 CAGATCCGTCGGTTCCTTG---TT------CCACATCTCGTACTGCAGAATGCCCTTGCT 2550 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || |||||||||||||| ||| ||| ||||| || || |||||||| ||||||| | Sbjct 2549 CACCGGGCTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAGCTCACAGCTCGC 2490 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC----GGGCCT 244445 || || ||| ||||||||||||| ||||| || ||| | || | || | |||| Sbjct 2489 TTCCAGTGCGCCGTAGTAGATGGTTTCGAATAT----TTGCTGATTTAGCTTTTGAGCCT 2434 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | || || ||||| ||||| | ||||||| ||||||||||||| Sbjct 2433 CTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGA 2374 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 ||||||| |||||||| ||| | ||||||||| | || || |||||||| || | ||| Sbjct 2373 TGCCGATCGGTCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGA 2314 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | || || | ||||| || ||||| || | | |||| || |||| || Sbjct 2313 CATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAA 2254 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| ||| | | | || | |||||| ||| | ||||| Sbjct 2253 AGTCATACGTTTTGTCTTGCT---------------TTACAAACATGTTCAAGGCGATCG 2209 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||||| ||||| || || ||||| ||| | ||||| |||||||| ||||| | Sbjct 2208 AGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACA 2149 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG-CG-TTGCAGGCGTC 244803 |||| || ||||||||||| | | ||| || || |||| || ||||| || || Sbjct 2148 GGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATC 2091 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGA 244862 |||||| |||||| | || | ||||| || | ||| | ||| || ||| ||| | Sbjct 2090 CTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAA-CCACA 2032 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCG---AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACA 244919 | ||| ||||| ||| || || ||| |||||| |||||| | ||||||| Sbjct 2031 GATCCTGCGCCTTCACCTGCC-GCATAAAGCGA--CCCTCTTTCTCGTACCCCGTGTACA 1975 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | ||||||||| ||||||| || ||| ||||| || ||||||||| | Sbjct 1974 GCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCA 1915 Query 244980 GACTCCAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | |||||| ||| |||| ||| || | ||||||||| ||||| || |||||||| Sbjct 1914 GGCTCCACATTTCGTTCGCC-TCC---ACACGCTGCATGAACAGGTCCGGTATCCAGAGT 1859 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 || | || | ||||| || | | | ||| ||| ||| ||||| ||| |||| || | Sbjct 1858 GCGTAAAACATGTCCC--GTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGA 1801 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| || || | ||| | ||||| ||||| | |||| |||| || |||||||||| Sbjct 1800 GAAACTCGAATATATCGCCATGCCACGGCTCAAGATAGATGGCGAATGCTCCGGGCCGCT 1741 Query 245154 TGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTA 245213 ||||||| ||||| || || || | |||| ||| |||||| | ||||| | Sbjct 1740 TGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCA 1681 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 ||||| || ||||| || || |||||| | ||||| | | || | | Sbjct 1680 GACCGTTCGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCA 1621 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || || | || ||||| || || || || || || ||| | ||||| Sbjct 1620 CGTTCAGTCCGATGCCACCGGCCGATTTCGAAATTAGAGCACACTGCTTCAGCGTGTCGT 1561 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG--- 245390 |||||||| ||||| || |||| | | ||| |||||||| || ||||||| Sbjct 1560 AGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGAC 1501 Query 245391 GCT-TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GA 245448 ||| | || ||| | |||| || || ||||||||| ||||| | |||| || Sbjct 1500 GCTGCGTAGCCGCAGCA----AACATGGTTGGCGAGGCGTGGGTGAAGTAAC-GCTCGGA 1446 Query 245449 GAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA 245508 || | ||| |||| || | || ||||||| ||||| ||||| | ||| Sbjct 1445 CAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATGGCAAC 1386 Query 245509 CCTCATGAGGGTGTGCTGGGGCGTCTCGA 245537 | ||| || |||||||||| ||||| Sbjct 1385 GCGCATCAGCATGTGCTGGGGGCGCTCGA 1357 >seq6779 Length=15061 Score = 237 bits (262), Expect = 3e-57 Identities = 319/438 (73%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || ||| |||| ||| | |||| |||||||||||||||||| ||| Sbjct 2972 CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGAGGAAGGCGGACTGGGCGCTGAAC 3031 Query 42669 TGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| ||| | || | |||| || |||||| || | || || || | || || | Sbjct 3032 TGGATCTCGAG-CAAGAAGGCCAAC-TTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTG 3089 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-- 42784 |||| ||||||||| || ||||||| | ||||||||||| ||| || ||| | Sbjct 3090 AGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAG--CGTGGCCT 3147 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| |||||||||||||||||||| || ||| | ||||| |||||||| | || Sbjct 3148 GATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGA 3207 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| ||||| | | || ||| ||||| ||||||||||| || Sbjct 3208 CTTTGCCTGCCTGATGTTC---AAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGAC 3264 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || || || ||||||| |||||||||| ||| || | ||||| || Sbjct 3265 GGAGATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT 3324 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || | ||||||||| || || |||| ||||||| ||| || ||||| | Sbjct 3325 GGATATGCTTGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCG 3384 Query 43025 TCTCCTGTGCCAGATGGG 43042 | | ||| | || |||| Sbjct 3385 TTTGCTGCTCGAGCTGGG 3402 Score = 118 bits (130), Expect = 2e-21 Identities = 178/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||| | || ||| |||| ||| ||||||||| | | ||||||| | ||| Sbjct 2602 CTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACTGGGAGACGCTGAAACC 2661 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 || |||| ||| || || | ||||||||||| ||||| || ||||| || || Sbjct 2662 GAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCCGCGTCCGACGGTATCGT 2721 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGC 42512 || ||||| |||| | |||| | ||||||||| ||| || ||||||||| Sbjct 2722 GAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC--GGAAGCGCGCTGC 2779 Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 ||||||||||||||||| || || || || |||||| |||| ||||| | ||| || Sbjct 2780 TTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGTGAGATGTACTCGCTGCTGATC 2839 Query 42573 AACACGTACAT 42583 |||||||||| Sbjct 2840 GACACGTACAT 2850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944100412029040