Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8504 228 8e-55 seq2002 136 4e-27 seq8412 127 2e-24 >seq8504 Length=8995 Score = 228 bits (252), Expect = 8e-55 Identities = 945/1456 (65%), Gaps = 61/1456 (4%) Strand=Plus/Minus Query 146056 AGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTG 146115 |||| ||||| |||||||| |||||||| | || |||||||| || ||||| Sbjct 2788 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 2729 Query 146116 GTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATG 146175 ||| ||||||||||||| || ||||| ||||| || || ||||| | ||| || ||||| Sbjct 2728 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 2669 Query 146176 TACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGA 146234 |||| ||||| || || | | |||||| ||| | ||||||||| | | || Sbjct 2668 GGGGCCAACAGCAGCGAATTGCGAATGCCGTG-CTTGGCGATCTTTTCCTTCAACTCGGC 2610 Query 146235 CCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCG 146294 ||| ||||||| ||||||| || | | || | | ||||| |||| | |||| Sbjct 2609 CCAGTTCCACA---GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTT 2553 Query 146295 GAACAGGGGGCTATTCTCGTACGATTCATAAGGACC--GTCGATCTTGGCCAGTTCGCAG 146352 | || ||||| |||||||| || || ||||| |||| | |||||| || ||| Sbjct 2552 GCTCACCGGGCTGCCCTCGTACGTCTCGTACGGACCATCTCGAGC--GGCCAGCTCACAG 2495 Query 146353 CTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA---CGCTCCTG 146409 || |||||||| || |||| ||||| | ||| || | | ||| ||| || Sbjct 2494 CTCGCTTCCAGTGCGCCGTAGTAGATGGTTT---CGAATAT-TTGCTGATTTAGCTTTTG 2439 Query 146410 -GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTA 146467 ||||| ||||| ||||| ||||| || | || | || || ||||| | ||||| | Sbjct 2438 AGCCTCTTCGCTTTCGTA-CGGATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCA 2380 Query 146468 TCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGT 146527 |||| || | || | ||| | | || | | ||| ||| |||||||| Sbjct 2379 CGCCGATGCCGATCGGTCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 2320 Query 146528 GGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCA 146587 ||| || ||||| ||||| ||||| ||| || | || | | |||||| Sbjct 2319 AATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCT 2260 Query 146588 GGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCA 146647 || ||||| | ||||| || || || || || |||| | |||||| ||||||| Sbjct 2259 TTGCAAAGTCATACGTTTT-GTCTT--GCTTTACAAACATGTTCAAGGCGATCGAGGCCA 2203 Query 146648 AGTTACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTG 146706 || ||||| || ||| ||||| | || | |||| ||||||||| | ||| |||||| Sbjct 2202 GATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATCTCAGTGCACAGGTTG 2144 Query 146707 CTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAG 146766 || |||||| |||| | ||| | |||||||| ||||| | |||||||| Sbjct 2143 GAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTAC 2084 Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT--GAATCTAAACAAATCTC 146824 |||||||||||| | |||||||| || | | |||| ||| || | ||| ||| | Sbjct 2083 AGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC--CACAGATC-C 2027 Query 146825 TG-GCCTTTACTTGTCTTTCGTACAG-TTTATTCTTT-TCGTATTTCTCGTACAATATTT 146881 || ||||| || || | | || || ||||| ||||| | ||||| | | Sbjct 2026 TGCGCCTTCACCTGCC--GCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCT 1969 Query 146882 CAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACC 146941 | || || | ||| || |||||| | | | || || | ||| || Sbjct 1968 CGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCC 1909 Query 146942 ATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCA 147001 | || ||| ||| ||| || | ||| |||| || || ||||| || | | || Sbjct 1908 ACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACA 1849 Query 147002 AGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAA 147061 ||| || || | | ||||| ||| |||| ||| | ||| | ||| | | Sbjct 1848 TGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATA 1789 Query 147062 TTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCT 147118 | || |||||| ||||| | || ||||| ||| || ||| || || |||| Sbjct 1788 TATCGCCATGCCACGGCTCAAGATAGATGGCGAATGCTCCGGGCCGCTTGTTGCCACCCT 1729 Query 147119 GATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA-- 147176 ||||||||| || || | || ||| |||| || | ||| | ||| || ||| || Sbjct 1728 GATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAA 1669 Query 147177 ----TTTTGTGGTGCCGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGA 147226 || || | | |||| | |||| || | |||||| |||| |||| Sbjct 1668 TCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGA 1609 Query 147227 GACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGA 147286 || ||| || |||||||| | ||| ||| | || || | ||||||||| || | Sbjct 1608 TGCCACCGGCCGATTTCGAAATTAGAGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAA 1549 Query 147287 TGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCG 147346 |||| ||||| ||| |||||| || || | | |||||||| ||| ||| Sbjct 1548 TGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTAGCCG 1489 Query 147347 CCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGT---GCCCAGACTCATCA-ATTGATAC 147402 | ||||||| || || |||||| ||||| || || | || || || |||| || Sbjct 1488 CAGCAAACATGGTTGGCGAGGCGTGGGTGAA-GTAACGCTCGGA--CAGCAGATTG-TAG 1433 Query 147403 GTTTCAATGGCGCT-CAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCA 147460 || || || |||| ||| | ||| ||||| || ||| | | ||| |||||||| |||| Sbjct 1432 GTCTCGAT--CGCTGCATCGATGTCCTCGCCATGGATGCCAATGGCAACGCGCATCAGCA 1375 Query 147461 TGTGCTGGGGTCGTTC 147476 |||||||||| || || Sbjct 1374 TGTGCTGGGGGCGCTC 1359 >seq2002 Length=20453 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | || || || || ||||| ||||| ||| Sbjct 18678 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 18619 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 18618 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 18559 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | |||| ||||||| | |||||| Sbjct 18558 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 18499 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || ||||| || |||||||||||| Sbjct 18498 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 18451 >seq8412 Length=7683 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| ||||| ||| | || ||||| || || || ||||| ||| Sbjct 4015 GCACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 3956 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| ||| || ||||| || || ||| |||||| ||||||||||| || Sbjct 3955 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 3896 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 3895 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 3836 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 3835 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 3786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475380563678960