Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8504 259 4e-64 seq2002 104 2e-17 >seq8504 Length=8995 Score = 259 bits (286), Expect = 4e-64 Identities = 981/1522 (64%), Gaps = 62/1522 (4%) Strand=Plus/Plus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||||| ||||| || | ||||| || ||| ||| ||| || ||| ||| ||| Sbjct 1293 TACAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTGCTGAAGATCAAGGGAAAA 1352 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||| ||| || || || ||||| |||||||| || || ||| | || || ||| Sbjct 1353 ATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCCATTGGCATCCATGGCGAGGAC 1412 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 ||||| |||| ||| || ||| || || |||| | | ||||| ||||| Sbjct 1413 ATCGATGCAGCGATCGAGACCTACAATCTGCTGTCCGAGCGTTACTTCACCCACGCCTCG 1472 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || || |||| || || | ||| || || ||| | || || || || || | ||| Sbjct 1473 CCAACCATGTTTGCTGCGGCTACGCAGCGTCCCCAGCTTTCGTCCTGCTTCCTGTTGACC 1532 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || |||||| ||||| || ||||| || || || | || || | ||||| Sbjct 1533 ATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGTGTGCTCTAATTTCG 1592 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCG-GAAGC---CG 123196 |||| | ||| ||||| || ||||||||||| ||| ||||| |||| || Sbjct 1593 AAATCGGCCGGTGGCATCGGACTGAACGTGCACT--GTAT----CCGCGCGAAGGGAACG 1646 Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| | || |||| || | ||| || | | |||||||| || ||||| Sbjct 1647 TACATCTCCGGTACGAACGGGATTTCGAACGGTCTGGTGCCGATGCTGCGCGTCTACAAC 1706 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| ||||||| ||||| ||||| || || || | || |||||| Sbjct 1707 AATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCCGGAGCATTCGCCATCTAT 1766 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || |||||||| | ||| | | ||| ||| | || | || |||| || | Sbjct 1767 CTTGAGCCGTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGAAAAACACCGGCAAG 1826 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || || || || |||| ||||| | ||| |||| || |||| |||| Sbjct 1827 GAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGGACCTGTTCATGCAG 1886 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGT-GTCCCGGCTTGAG 123490 || || | | ||| ||||| || ||||| |||| || | ||||||| | Sbjct 1887 CGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTG-CCCGCACGATTGTCCCGGGCTATC 1945 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 ||| | ||| | |||| || || ||||| || |||||| || || | Sbjct 1946 GGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGAAAGAGGGT---CG 2002 Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGT 123604 ||| | ||||| ||| | ||| ||| ||| || |||||| | || || Sbjct 2003 CTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGG---TTTGCGATCATCGAATCGCAGGT 2059 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 |||||||| ||||||||||| ||||| || || ||||| | |||| || ||| Sbjct 2060 GGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAACCAGCA 2119 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGAT 123722 || | || || || |||||| || || ||| | || ||| | || ||| ||| Sbjct 2120 GAATATCGGCACCATCAAATGTTCCAACCTGTGCACTGAGATTGTGGAGTACTCGTCGAA 2179 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA--TCGTTGCGTCG--- 123777 | ||| | || || || || ||| |||| ||||| | |||| | ||| | Sbjct 2180 G--GATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTTTGTAAAGCAA 2237 Query 123778 ---AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG- 123833 |||||| | | | ||| |||| ||| || | | || || ||| | | Sbjct 2238 GACAAAACG----TATGACTTTGCAAA-GCTGAAGGAAGTCGCTAAGAC---AGTGACGC 2289 Query 123834 --AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTT 123886 ||| |||||||||| || ||||| |||| ||||| || |||| |||||| Sbjct 2290 GCAATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAAGCGC---- 2345 Query 123887 GTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGT 123946 || ||| || ||||||||| |||| | ||| | || || ||||||| ||||| | Sbjct 2346 -TCCAATATGCGCCACAGACCGATCGGCATCGGCGTGCAGGGCATGGCCGATGCGTTCAT 2404 Query 123947 AATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGA 124006 || ||||| |||||||||||||| || || | ||| ||| ||||||| ||| Sbjct 2405 CCTGATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAGCAAATATTCGA 2464 Query 124007 AACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTA 124066 ||| || || |||||||| |||| |||||||| || || || | || |||| Sbjct 2465 AACCATCTACTACGGCGCACTGGAAGCGAGCTGTGAGCTGGCCGCTCGAGATGGTCCGTA 2524 Query 124067 CGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGC 124126 ||| | |||| ||||||||||| |||| || ||| |||||||||| |||||||| Sbjct 2525 CGAGACGTACGAGGGCAGCCCGGTGAGCAAGGGCATTCTGCAGTACGAGATGTGGAACAA 2584 Query 124127 TACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTT 124186 |||||| || ||||| ||||| || || || || || | | |||||| | Sbjct 2585 GGAACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGCCAAGCACGGCAT 2644 Query 124187 GCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAA 124246 || || |||||| || |||| ||||||||||| |||| || |||||| | || || Sbjct 2645 TCGCAATTCGCTGCTGTTGGCCCCGATGCCGACGGCTTCCACGGCACAAATTCTCGGCAA 2704 Query 124247 CAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGA 124306 ||| ||||| |||||||||| ||| || | ||| | || ||| | | ||||| Sbjct 2705 CAATGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGCTGTCGGGCGA 2764 Query 124307 TTTTCAAGTGATAAATCATCAT 124328 || || ||| | || |||||| Sbjct 2765 GTTCCAGGTGGTGAACCATCAT 2786 >seq2002 Length=20453 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| ||||| || || |||||||| || || || || ||| | Sbjct 18678 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 18619 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| || || || ||| | |||| || ||||| || || ||| Sbjct 18618 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 18559 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || ||| || | || | ||||| |||| |||||| Sbjct 18558 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 18499 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| || ||||| || ||||| ||||| Sbjct 18498 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451888905340840