Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3725 150 1e-31 seq2002 105 5e-18 seq8412 89.7 4e-13 >seq3725 Length=17844 Score = 150 bits (166), Expect = 1e-31 Identities = 223/314 (71%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 8993 AATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT-GGAA 9048 ||||||| ||||| || || || |||||| |||| || | || || || ||| |||| Sbjct 16706 AATTAGTGCCGGTCGATCCGAAACCTCCCGCTCCACGCTCTGTATCGGTAAGCGTTGGAA 16765 Query 9049 GTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCC 9108 | |||| ||| |||||| |||| || ||||| || || || || | || Sbjct 16766 G----CTCTTCCAAATCCGGATAAGCTATTTTCTCGCAAATAAACTGTGCGATGCGATCA 16821 Query 9109 CCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168 || || || || |||||| ||| || || ||||||||||| || ||||| ||||||||| Sbjct 16822 CCTTTCTTAACTTCAAAGTTTGTCTCCGAGTGATTGAACAGTACAACTCCGACGTTACCC 16881 Query 9169 CTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCA 9228 | ||| || || |||| ||||| || ||||| |||||||||| || || || | || Sbjct 16882 CGGTAGTCTTCGTCGACGACACCGGCGCCCACATCGATGAAGTTTTTCACGGCCAAACCG 16941 Query 9229 GAGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATG 9288 || || || || | ||| || ||||| || |||| | || ||| | | ||||||||| Sbjct 16942 GAACGTGGAGCCACTCGGCCATAGCAACCTTCCGGCACCTGGACCTGGATGTCGGTCATC 17001 Query 9289 ACCAGCCCCTTGCC 9302 || ||| ||||| Sbjct 17002 ACGAGCTGTTTGCC 17015 >seq2002 Length=20453 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || || ||| | ||| Sbjct 18669 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 18610 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||| ||| Sbjct 18609 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 18550 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||| | || Sbjct 18549 TTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 18490 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 18489 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 18452 >seq8412 Length=7683 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || ||||| || || || | || Sbjct 4003 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGG 3944 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | || | |||||| Sbjct 3943 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 3884 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 3883 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 3824 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 3823 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 3782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380843683286967