Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6779 132 6e-25 seq5904 120 4e-21 seq1434 118 1e-20 seq8504 105 8e-17 seq4464 95.1 1e-13 >seq6779 Length=15061 Score = 132 bits (146), Expect = 6e-25 Identities = 162/221 (73%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| ||||| |||| ||| || ||||| ||||| |||||| Sbjct 3195 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTC 3136 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| ||| ||| || || ||| ||||| ||||| || || || || Sbjct 3135 TTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGATACCCTCAACCGCAGCGAAT 3076 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | || ||||||| ||||| | | ||| |||| | |||||| |||| |||| Sbjct 3075 GCCACGACCCGCTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGCGCC 3022 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||||| ||||| || |||| |||||| ||| |||||||| Sbjct 3021 CAGTCCGCCTTCCTCTTCACGCACGGCAGCGTTTCGATGGC 2981 Score = 100 bits (110), Expect = 3e-15 Identities = 159/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 868789 CTTTTCGCATCCGAGCGACGCG-AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACA 868847 ||| ||||| || ||| || | |||| || ||||| |||||||| |||||||| ||| Sbjct 3412 CTTCTCGCAGCCCAGCT-CGAGCAGCAAACGATCGGCCACAAACTCAATGTACTGCGACA 3354 Query 868848 TGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCT 868907 | || | ||||||||| | | |||||||||| | || ||| ||||| | || Sbjct 3353 TCAGATCACAGTTCATGCCAAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCT 3294 Query 868908 CGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGA 868964 ||||| ||| || ||| |||||||| | | |||| || ||| ||||| | | Sbjct 3293 CGATCAGGACCGCATCGCGGATGATCTCCGT---CACGCGCTCCTTCGACGGCTTCTGCA 3237 Query 868965 CGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCAACCCT 869008 | || | || | | ||||||||||||||||||||||| |||| Sbjct 3236 CCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 3193 >seq5904 Length=10706 Score = 120 bits (132), Expect = 4e-21 Identities = 209/296 (71%), Gaps = 15/296 (5%) Strand=Plus/Plus Query 733017 GTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCAT 733075 ||| || |||||| |||| |||| ||| ||| | ||||||| ||| |||| | | Sbjct 3442 GTGATGCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATCCGTGT-GCGCTCGGT 3500 Query 733076 GCGCCAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGG 733135 |||| || || | |||||||| | |||| |||||||| || || || || ||| | Sbjct 3501 GCGCATACCGCAGATCGGCGACAAGTTTGCGTCACGCCACGGACAGAAAGGTAC-GTGCG 3559 Query 733136 -----CAGCGTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCC 733190 ||| | | ||| ||||||||||| | || | | ||| ||| ||||| Sbjct 3560 GTATACAGTAT---CGCCAG-GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCCG 3612 Query 733191 GACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAG 733250 ||||| | ||||||||||||||||||||||| || |||||||| || | || ||||| Sbjct 3613 GACATTATCATCAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGAG 3672 Query 733251 GCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 | ||| ||||||| ||| || | ||||| | |||||||||| |||||| || Sbjct 3673 TGCATCCAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 3728 Score = 87.8 bits (96), Expect = 2e-11 Identities = 209/308 (68%), Gaps = 15/308 (5%) Strand=Plus/Plus Query 732337 CCTTTACGCACGTCGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCC 732396 ||| ||||||| |||| | || ||| | | || | || | |||||| ||||| |||| Sbjct 2798 CCTATACGCACTGCGAGATCCATCCGGCGATGATTTTGGGCGTCTGCGCTTCCATTATCC 2857 Query 732397 CGTTCTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGA 732456 ||||| | | ||||||||| ||||| |||| |||||| | || ||||| |||||| Sbjct 2858 CGTTCCCGGATCACAACCAGAGTCCGCGTAACACCTACCAAAGCGCTATGGGTAAGCAGG 2917 Query 732457 GCAAGGCCGTCGTGTCGCTCAACGCCGACCACGC---CATCGACACGGTGTCGCACGCCC 732513 | || || |||| ||| | ||||| ||| |||||| | |||||| | Sbjct 2918 CGATGG--GT-GTGTACATCACGAACTTCCACGTGCGCATGGACACGCTCGCGCACGTGC 2974 Query 732514 TGTGCTACCCGCAGGTGCCGCTGGTGCAGAC-CG--CCATGGAGGACGTCATCGGCGCCA 732570 | | ||||||| | |||||| ||| ||| || | |||||| | || ||| || Sbjct 2975 TTTACTACCCGATGAAGCCGCTCGTGACGACGCGTTCGATGGAGTA--TCTGCGGTTCCG 3032 Query 732571 CGCGCCTCCCGATGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCC---CTACAACC 732627 || || | ||| || || || |||||||||| || || || | |||||||| Sbjct 3033 CGAGC-TGCCGGCCGGTATTAACTCGATCGTGGCCATCCTGTGCTACACGGGCTACAACC 3091 Query 732628 AGGAGGAC 732635 |||||||| Sbjct 3092 AGGAGGAC 3099 >seq1434 Length=23895 Score = 118 bits (130), Expect = 1e-20 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| ||||||| || || | || || ||| ||| Sbjct 9101 AAGCGCACCGACGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGCACG 9160 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| ||||||| ||||| ||||| || ||||||||| ||||| || | Sbjct 9161 CTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTGACC 9220 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || || Sbjct 9221 TGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGTTC 9280 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 9281 AACATCAAGAACG 9293 >seq8504 Length=8995 Score = 105 bits (116), Expect = 8e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || ||||| | ||| ||||||| ||||| ||||| || ||||| || Sbjct 1730 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGA 1671 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| || || | | ||| | || ||||| | |||| || | || Sbjct 1670 AATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCC 1611 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| |||||||| || || || || || ||||| || |||||||||||||||||||| Sbjct 1610 GATGCCACCGGCCGATTTCGAAATTAGAGCACACTGCTTCAGCGTGTCGTAGATGCCCTC 1551 Query 1630245 GAT 1630247 || Sbjct 1550 AAT 1548 >seq4464 Length=13105 Score = 95.1 bits (104), Expect = 1e-13 Identities = 336/511 (66%), Gaps = 23/511 (5%) Strand=Plus/Minus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| |||| || ||| | |||| |||| ||||||||||| ||| | ||||| Sbjct 4287 AGGTCGATTTTTGAGTCCTCCTCACTGGACGACATCTTGCCGC---CGGCCAATCCCGGG 4231 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCG 1852158 | | ||| || | || || | ||||| || || || |||||||| | | || Sbjct 4230 ATCATCGGATTCATAAGATGAATACGCTTGGCGTAACCCAGCTGCGGCAGGTATTTCTCG 4171 Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 || |||| || || || ||||| || ||| || ||||||||||| || | || | Sbjct 4170 -GCGAAGGTGAAAATTTTACGCTGATCCACCCCACCGAACTGGGCGTCCACCTTCAGATA 4112 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTC 1852278 || |||||| || ||||||| |||||| || | | || ||||| | | || Sbjct 4111 CTCCTCGTCAAGCGCCTGCAGACCCGGGTACAGGATGCCCGACATCAGCGGAT---GCTC 4055 Query 1852279 CA---TCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGC 1852332 || ||| ||||||| || | |||| || ||| ||||| |||| |||| || Sbjct 4054 CACCTGCTTCACCACCTCCGCTCCCGCCTTCTTAGCGTCGTGC---TGCGTCACGACCGA 3998 Query 1852333 CGCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGC 1852390 | | ||||| | || |||| ||| | || || || ||| || || ||||||| | Sbjct 3997 GGATAACCGGTACACATCCAGCGTGTA--CTCCTTCGACAGCTGATAGTCCGTGCCGCAC 3940 Query 1852391 ACAAACTCGAGTCCGCCCAGCGGCACGCCGA-TGTGCTGGAGCATGGCCTTGATGGCAAA 1852449 || |||| || | |||||||||| |||| | | | ||||| |||||||| | Sbjct 3939 ACGAACTTCAGCTTGTCCAGCGGCACTCCGAGCGAGGT-AAGCATCGCCTTGATAACCGC 3881 Query 1852450 CTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTG 1852509 |||||| | | || | | || ||| |||||||| ||| |||||| || | Sbjct 3880 CTCGTAGTACTTGGTGCGTTCCTTGAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATA 3821 Query 1852510 GGCGTGCACGTCGGCAAAGAGGATCTTGACC 1852540 |||||||| || ||||| |||||| | ||| Sbjct 3820 GGCGTGCAGATCTGCAAACAGGATCGTTACC 3790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105479113527593