Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq214 89.7 1e-12 seq4818 86.0 1e-11 >seq214 Length=55657 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 82625 CTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAG 82684 |||||| || || || |||| || | |||||| || || ||||| || |||||||| | Sbjct 2778 CTGTATGTTGTAGTCGGATATGATCCGACCGTCATCCAGCTGTTTACCGGCAAAGATGAT 2837 Query 82685 TCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 || || |||||||| | || ||||| | || ||| |||||||||| || | ||| Sbjct 2838 TCGCTGCTGATCTGGTGAAATGCCTTCACGTTGTTCAAT-TTTGCTTTTA-ATGTCCAAA 2895 Query 82745 --CGTATCATTAG-GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||| || || | || || || | || ||||| || || || |||||||||||||| Sbjct 2896 ACCGTTTCCGAAGCGATC-ACATCAAGGGTGATCGTTTTCCCGGTTAACGTCTTTACAAA 2954 Query 82802 TATCTGCAT 82810 |||||||| Sbjct 2955 GATCTGCAT 2963 >seq4818 Length=14046 Score = 86.0 bits (94), Expect = 1e-11 Identities = 197/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 || || | ||| |||| |||||| ||| ||||| | | || | |||||| | | Sbjct 10266 CTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAG 10207 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 || || || ||||| | || | | ||||||||||| |||||||| || || ||||| Sbjct 10206 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 10147 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | ||| || || || || ||||| | |||||||| ||| || ||| || || Sbjct 10146 AAAACGCCCGAGGAAGCGCTTGAGACGGCG-ATCTATCTGAACGATCGCTACAGTCTGGA 10088 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550 || ||||| ||||| ||||| ||||| |||||||| || || | || |||| Sbjct 10087 TGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCA 10028 Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | ||||| || | || ||||| || || | || ||||| ||||| || Sbjct 10027 GGGCTGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGG 9974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981572726037631