Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq8504 471 4e-128 seq2002 140 3e-28 seq8412 123 2e-23 seq6779 113 4e-20 >seq8504 Length=8995 Score = 471 bits (522), Expect = 4e-128 Identities = 1023/1517 (67%), Gaps = 24/1517 (2%) Strand=Plus/Minus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| || ||||||||||| |||||||| | |||||||||| || ||||| | Sbjct 2788 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 2729 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || |||| || ||||| || |||||||| | ||| || || || | ||||| ||||| Sbjct 2728 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 2669 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || | ||||||||| ||||| | ||| | || || || ||||| | ||| Sbjct 2668 GGGGCCAACAGCAGCGAATTGCGAATGCCGTGCTTGGCGATCTTTTCCTTCAACTCGGCC 2609 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||| ||| || || |||| | ||||||||| ||||||||||||||||| ||| Sbjct 2608 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTC 2549 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 | |||||||||||||||| |||||| || | || ||||| || |||||||| Sbjct 2548 ACCGGGCTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAGCTCACAGCTCGCT 2489 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || || ||||||||||| || || ||| |||||| || ||| ||| ||| Sbjct 2488 TCCAGTGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCG 2429 Query 148611 CTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCC 148669 ||||||||||| ||| |||| | | | ||||| ||||| | |||||| ||||| | ||| Sbjct 2428 CTTTCGTACGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCCTGCACGCCGATGCC 2370 Query 148670 AATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGT 148728 || || | ||| || |||||| | || ||| | | ||||||| ||| | Sbjct 2369 GATCGGTCTGTGGCGCATATTGGAGCGCTTAGC-CTCCGGCACGGGATAGTAATTGACAT 2311 Query 148729 CGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAAT 148788 | ||||| |||| ||||||||| ||| ||| | | | |||| | |||| | Sbjct 2310 CAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGT 2251 Query 148789 CGTAC---TTGTC---ATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 | ||| ||||| | ||| | ||| ||||| |||||| ||||| |||||||| | Sbjct 2250 CATACGTTTTGTCTTGCTTTAC-AAACAT--GTTCAAGGCGATCGAGGCCAGATTGCATA 2194 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGA 148902 | || ||||||| | |||||| || ||||| | |||||| ||| ||||||| Sbjct 2193 CCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAGGTTGGAACATTTGA 2134 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | ||| | |||| || || || || | ||||| || ||||||||||||||||||| Sbjct 2133 TGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACG 2074 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTAT--GAACCGATGCAGGTCCTGCGCGCGCAC 149020 || |||| ||||||||||||| ||| | || || | | ||| |||||||| ||| Sbjct 2073 GTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCA--CAGATCCTGCGCCTTCAC 2016 Query 149021 TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080 ||| || |||||||||| | |||||| || |||||| ||||||| | ||||| Sbjct 2015 CTGCCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCC 1956 Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140 || || || ||||| || | |||||||||||| || ||||| ||| ||| Sbjct 1955 CCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGC 1896 Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200 | ||| |||| ||| ||||| || || | |||||| ||||| | | ||| || || Sbjct 1895 CTCCACACGCTGCATGAACAGGTCCGGTATCCAGAGTGCGTAAAACATGTCCCGTGCGCG 1836 Query 149201 GCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCA 149260 | || || ||| |||| ||| | ||| | |||||| || | ||||| Sbjct 1835 GACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCA 1776 Query 149261 CGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCG 149317 |||||||| || | |||| || || ||| ||||| ||||| ||||||| || Sbjct 1775 CGGCTCAAGATAGATGGCGAATGCTCCGGGCCGCTTGTTGCCACCCTGATCGACGTACCG 1716 Query 149318 CACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGA 149377 || | ||||| | || || | ||| || | | || | | | | ||||| ||| Sbjct 1715 TGCCGTATTGTTGTAGACGCGCAGCATCGGCACCAGACCGTTCGAAATCCCGTTCGTACC 1656 Query 149378 GCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTA 149437 | ||| | || ||| || | ||||||||| | |||||||| ||| | | Sbjct 1655 GGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGA 1596 Query 149438 CTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTT 149497 || || || || || | ||||| |||||||||||| ||||| || Sbjct 1595 TTTCGAAATTAGAGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGA 1536 Query 149498 CATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGT 149557 |||||||| ||| ||||| || | | || ||| |||| | || || |||||||| Sbjct 1535 CATGGTCAACAGGAAGCAGGACGAAAGCTGGGGACGCTGCGTAGCCGCAGCAAACATGGT 1476 Query 149558 GGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTC 149617 || |||||| || || || || | || || | ||| | ||||| | | || Sbjct 1475 TGGCGAGGCGTGGGTGAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATC 1416 Query 149618 CATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGC 149677 ||||| |||||||||||||| ||||| |||||||||||||| ||||| || ||||| | Sbjct 1415 GATGTCCTCGCCATGGATGCCAATGGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGAC 1356 Query 149678 CACTTTGTTTCC--AATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTAC 149735 | || || || || || |||||||| ||| | || || |||| || || Sbjct 1355 GA--TTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAG 1298 Query 149736 TTGTAGTCAAAGTCGCG 149752 ||||| | |||||||| Sbjct 1297 TTGTACCCGAAGTCGCG 1281 >seq2002 Length=20453 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| | ||| ||| | ||||| |||| Sbjct 18655 ATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA-TCCTCCAGCT 18597 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || || |||||||||||||| ||||| Sbjct 18596 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCT 18537 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||| | |||||| | ||||| || || | |||| ||| ||||||| Sbjct 18536 TTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 18477 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||||||||| Sbjct 18476 TGAGTGTTTTCACGAAAATCTGCATG 18451 >seq8412 Length=7683 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || |||| | | | ||||| |||| Sbjct 3989 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCCTCCAGCT 3931 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 3930 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 3871 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || | Sbjct 3870 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCG 3811 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 3810 TGAGGGTTTTGACGAAGATCTGCAT 3786 >seq6779 Length=15061 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||| || ||||||||||| ||||||||||| || || Sbjct 3220 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 3161 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||| | ||| | |||| | |||| || ||||| ||||| || || Sbjct 3160 GAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAA 3101 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| || || || || || | |||||| | || | ||| ||||||| Sbjct 3100 GAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 3041 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||| ||||| || ||||| | ||||||||||| Sbjct 3040 CGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCA 2994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483298561007960