Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8504 125 1e-22 seq6779 107 3e-17 seq5904 96.9 5e-14 >seq8504 Length=8995 Score = 125 bits (138), Expect = 1e-22 Identities = 263/392 (67%), Gaps = 15/392 (4%) Strand=Plus/Plus Query 259791 TCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCG 259850 |||||||||| |||||| | ||||| ||||| || ||| ||||| |||| | | Sbjct 1354 TCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCCATTGGCATCCATGGC---GAGG 1410 Query 259851 ACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGT 259910 || |||| || ||| | ||| |||||| | |||| ||| | | Sbjct 1411 ACATCGA--------TGCAGC----GATCGAGACCTACAATCTGCTGTCCGAGCGTTACT 1458 Query 259911 TCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGT 259970 ||||| || |||| || | ||| ||| | |||| ||| || ||| |||||| | Sbjct 1459 TCACCCACGCCTCGCCAACCATGTTTGCTGCGGCTACGCAGCGTCCCCAGCTTTCGTCCT 1518 Query 259971 GCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGT 260030 |||| |||||| |||| | ||| || ||||||||||| |||||||| ||||||| Sbjct 1519 GCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAGCAGT 1578 Query 260031 GCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCG 260090 | || || || || || ||||||| |||||||| | || ||| | ||||| Sbjct 1579 GTGCTCTAATTTCGAAATCGGCCGGTGGCATCGGACTGAACGTGCACTGTATCCGCGCGA 1638 Query 260091 CGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCG 260150 ||| | ||| | | || || ||||| || ||||| || ||||| ||||| |||| Sbjct 1639 AGGGAACGTACATCTCCGGTACGAACGGGATTTCGAACGGTCTGGTGCCGATGCTGCGCG 1698 Query 260151 TTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | ||| | ||||| || |||||||| ||| Sbjct 1699 TCTACAACAATACGGCACGGTACGTCGATCAG 1730 >seq6779 Length=15061 Score = 107 bits (118), Expect = 3e-17 Identities = 185/265 (70%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| || || ||||| ||||| | || ||||| || || | |||| | ||| Sbjct 2586 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 2645 Query 1455856 GGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| | |||||| ||| ||| ||||| |||||| ||||| || ||||| ||| || Sbjct 2646 GGGAGACGCTGAAAC-CGAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTT-GC 2703 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||| || |||||| |||||| |||| | ||||| | | ||||| || | Sbjct 2704 CGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGT 2763 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | || || || | || ||||| |||||||| || || ||||| | ||| ||| | Sbjct 2764 TACGGAAGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGTGAGAT 2823 Query 1456035 CTACTCGCTCCTGATCGACACCTAC 1456059 |||||||| ||||||||||| ||| Sbjct 2824 GTACTCGCTGCTGATCGACACGTAC 2848 >seq5904 Length=10706 Score = 96.9 bits (106), Expect = 5e-14 Identities = 212/308 (69%), Gaps = 15/308 (5%) Strand=Plus/Minus Query 1601179 GTCCTCCTGGTTGTAG---GGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATCGG 1601235 |||||||||||||||| | || || || |||||||||| || || || ||| Sbjct 3099 GTCCTCCTGGTTGTAGCCCGTGTAGCACAGGATGGCCACGATCGAGTTAATACCGGCCGG 3040 Query 1601236 GAGGCGCGTGGCGCCGATGACGTCCTCCATGG--CG-GTCTGCACCAGCGGCACCTGCGG 1601292 | || || || ||| || | |||||| | || ||| ||| |||||| | ||| Sbjct 3039 CA-GCTCGCGGAACCGCAGA--TACTCCATCGAACGCGTCGTCACGAGCGGCTTCATCGG 2983 Query 1601293 GTAGCACAGGGCGTGCGACACCGTGTCGATG-GCA--TGGTCGGCGTTGAGCGACACGAC 1601349 |||| | || |||||| | |||||| ||| ||| ||| | ||| |||| || Sbjct 2982 GTAGTAAAGCACGTGCGCGAGCGTGTCCATGCGCACGTGGAAGTTCGTGATGTACAC-AC 2924 Query 1601350 GGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTT 1601409 || | |||||| ||||| || | |||||| |||| ||||| ||||||||| | Sbjct 2923 --CCATCGCCTGCTTACCCATAGCGCTTTGGTAGGTGTTACGCGGACTCTGGTTGTGATC 2866 Query 1601410 GGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTG 1601469 | |||||||| ||||| |||||| |||||| || | | ||| |||| |||| ||| Sbjct 2865 CGGGAACGGGATAATGGAAGCGCAGACGCCCAAAATCATCGCCGGATGGATCTCGCAGTG 2806 Query 1601470 CGTAAAGG 1601477 |||| ||| Sbjct 2805 CGTATAGG 2798 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || |||||| ||||||| | | ||||| | || ||| ||||||| ||| | ||| Sbjct 3728 AACGGCGTGGCGTCGCCGATTTCGCCCTTGTTCGAGCCCAGCTTGCCCTGGATGCACTCG 3669 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | || |||||||| || ||||||||||||||||||||||| | |||||| ||| Sbjct 3668 ATCAAATGCCCAATGGTCATACGGGACGGGATGGCGTGCGGGTTGATGATAATGTCCGGC 3609 Query 1600640 GT 1600641 || Sbjct 3608 GT 3607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175860075769098