Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20melas_20[genbank_20GCA_5F000473525.2_202014-01-17] 20,229 sequences; 224,162,116 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8504 242 4e-59 seq7263 174 2e-38 seq104 158 1e-33 >seq8504 Length=8995 Score = 242 bits (268), Expect = 4e-59 Identities = 468/687 (68%), Gaps = 4/687 (1%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| || |||||| |||||||| |||| || | |||| | | || ||| | ||| Sbjct 1455 TACTTCACCCACGCCTCGCCAACCATGTTTGCTGCGGCTACGCAGCGTCCCCAGCTTTCG 1514 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||| || | ||| || || || || ||||||||||| ||||| ||| Sbjct 1515 TCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAG 1574 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTC-GAACGTCC 53447 ||||||| | || || || | | | ||||| ||||| | || ||| | | | ||| Sbjct 1575 CAGTGTGCTCTAATTTCGAAATCGGCCGGTGGCATCGGACTGAACGTGCACTGTA--TCC 1632 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||||| || || ||| || |||||||| | | | || | ||||| |||| Sbjct 1633 GCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATTTCGAACGGTCTGGTGCCGATGC 1692 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||||| |||||| ||||| ||||||||| | |||||||| ||||| || Sbjct 1693 TGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCCGGAG 1752 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | ||||||||||| || ||||||||||| | ||| || | ||||||||||| ||| Sbjct 1753 CATTCGCCATCTATCTTGAGCCGTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGA 1812 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || || | || ||| | ||| || ||| ||||| || || ||||| |||| Sbjct 1813 AAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTCTGGATACCGG 1872 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||||| |||||| | |||| |||| ||||||||||||| |||| | Sbjct 1873 ACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCGCACGATT 1932 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 | ||||| || || || || || ||||| | || |||| | ||||| Sbjct 1933 GTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGA 1992 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 |||| |||| | | | |||| ||||||| || | ||| ||| ||| || | Sbjct 1993 AAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCATCGAAT 2052 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 |||||||| || || ||||||||| ||||||||| | ||| || || | Sbjct 2053 CGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTA 2112 Query 53928 ACCAGAAGAACATCGGCGTCATCAAAT 53954 ||||| |||| |||||| |||||||| Sbjct 2113 ACCAGCAGAATATCGGCACCATCAAAT 2139 >seq7263 Length=8888 Score = 174 bits (192), Expect = 2e-38 Identities = 291/417 (70%), Gaps = 9/417 (2%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||||| | || |||||||||||||| ||||| Sbjct 6341 CAGCTCCGGCCAGTTCGTGTGGATGAAGTTGATCAGCAGCCCCTTGATGTGCGACCCGTC 6400 Query 152802 AAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGG----TCACGTAGTGACC 152857 ||||| |||||||||||||||| ||||| ||||| ||| | || Sbjct 6401 CTGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGCAGCGTCTTCAGATCGTCCAT 6460 Query 152858 CGT-AG--ACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTC 152912 ||| || || | | | ||| || || ||||||||||| | |||||| || |||| | Sbjct 6461 CGTGAGGTACTTCTTCTTGTACTGCAGGCCGAGGATCTTGATCAGGTTGTTAATTTCCGC 6520 Query 152913 ATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGG 152972 ||| || | ||| || ||| || || || ||||| || |||| || || || || Sbjct 6521 ATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACATTCAGCAGCTTACCGCGCAGCGG 6580 Query 152973 AAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGC 153032 |||||||||| ||| || ||| || || || | ||| |||| | || || | ||| || Sbjct 6581 AAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTTTGGC 6640 Query 153033 CGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTT 153092 |||||| |||||||||| || ||||| |||| | | || | | ||||| ||| Sbjct 6641 CGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCGCGAGCCGGCATCGTT 6700 Query 153093 GGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTT 153149 ||||| || ||||| ||||| ||| ||||| | ||||| |||||| ||||| Sbjct 6701 CGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTTGAGCCGGACGTTTT 6757 Score = 140 bits (154), Expect = 4e-28 Identities = 282/411 (69%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || ||||||||||| || || |||||| Sbjct 6342 AGCTCCGGCCAGTTCGTGTGGATGAAGTTGATCAGCAGCCCCTTGATGTGCGACCCGTCC 6401 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093 ||||| ||||||||||||||||| ||||||||| | ||| |||| || Sbjct 6402 TGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGCAGCGTCT-TCAGATCGTCCAT 6460 Query 118094 --TAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 | | || | | ||| || || ||||||||||| | |||||| || |||| | Sbjct 6461 CGTGAGGTACTTCTTCTTGTACTGCAGGCCGAGGATCTTGATCAGGTTGTTAATTTCCGC 6520 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||| ||| | ||| || || || || || || || || ||||||| ||||| || Sbjct 6521 ATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACATTCAGCAGCTTACCGCGCAGCGG 6580 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| || |||| || || || || | || |||| | || || | || || Sbjct 6581 AAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTTTGGC 6640 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 |||||| |||||||| | || || ||||| | | | | |||| ||| ||||| Sbjct 6641 CGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCG-CGAG--CCGGCATC 6697 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||| | |||| | || |||||| || || || Sbjct 6698 GTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTTGAGCC 6748 Score = 116 bits (128), Expect = 4e-21 Identities = 210/305 (69%), Gaps = 14/305 (5%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| | || |||||| ||||||||||| | ||||||||| || ||||| Sbjct 5606 CGTGAAGATGTACCTGGGGCTGGCGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 5665 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || | || || |||| ||||||| ||| ||| | ||||| |||| || | Sbjct 5666 ACCGCCCGGGTACAGCAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 5725 Query 152148 AATCGTGCCCTGCAGA--CTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 ||||| | ||||| | || ||||| || || || | || ||||| | | Sbjct 5726 GATCGT--CGAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACCGAA 5783 Query 152206 CCCGCCAACTGCGCCACCTTCATGTC-----CGTCGTCAGGTTCTTCTTGAGACAGGCGT 152260 || |||| ||| |||||||||| || ||||||| | ||||| || | || Sbjct 5784 CCGGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTCACG-----CTTGAAGCACGTGT 5838 Query 152261 AAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGA 152320 | | ||||||||||||| || ||||| ||||||| || | ||||| || ||| | Sbjct 5839 ACAGCACCTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGCACGT 5898 Query 152321 TGTCC 152325 ||||| Sbjct 5899 TGTCC 5903 Score = 114 bits (126), Expect = 1e-20 Identities = 285/429 (66%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 |||| || |||||||| || || || || || || | |||||| | || || | || Sbjct 5452 ACCCGGTGCCGATACCGTCCGCTCCGTTGATTAGCAGCATCGGAATGATCGGCAAATACC 5511 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGAC--GTACTTGAGCACCGCATTGTCACT 117267 | | ||||| | || || ||| || || || ||||| |||| || || ||| Sbjct 5512 AAACCGGCTCGATGCGCTGATTGTCCTC-GT-ACTGGTACTCCAGCAGCGGATCGTCGAG 5569 Query 117268 CGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGC 117327 ||||| ||| |||| | ||| || | || ||||| ||||| | | ||| || Sbjct 5570 CGGATGGAAGATGTGCCGCGTCAGCGCGGACAGCATCGTGAAGATGTACCTGGGGCTGGC 5629 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| | || ||||||||||| || || | ||| | || || || | Sbjct 5630 GCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTGAT 5689 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 ||||||| ||| || |||| || |||| ||||| ||||| ||| | ||| Sbjct 5690 GTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGTCGAGCAGAGCGACATCTC 5749 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || || || || || | || |||||||| | || |||||||| |||||||||| || Sbjct 5750 GCCGTGATGGTAGGCGGACTTTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTCACCTC 5809 Query 117508 -----TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTC 117562 || ||||| | ||||| ||| | || | |||||||||||| | |||||| Sbjct 5810 GCGCTTGTCGTCACG-----CTTGAAGCACGTGTACAGCACCTTGCGCTGGCCCGGCTTC 5864 Query 117563 AGACCATCC 117571 | || ||| Sbjct 5865 AACCCGTCC 5873 >seq104 Length=60934 Score = 158 bits (174), Expect = 1e-33 Identities = 261/372 (70%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| || | |||||| || ||||| | |||||||||||||| Sbjct 1889 CGCCTGCTCGACAAACTCCCGCACCGAGTGCGTTTCGCCCGTCGCGATCACGAAATCTTC 1830 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || | |||||||| ||| |||||||| || | ||||||||||| ||||| ||||| Sbjct 1829 CGGCCGCTCCTGCTGCATCATCAGCCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCA 1770 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-----TGGCCG-TCTTGTTCCA 124654 ||||||||| | || || || || ||||| | || |||||| | || Sbjct 1769 GTCGCGCTTCGAGTCGAGATTGCCCAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTT 1710 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 || || | | | || || ||||||||||| || | || || ||| ||||| Sbjct 1709 GGCCACCGAGC---GGGTGATTTTGCGCGTCACGAAGTTCTCCCCCCGGCGCGGCGACTC 1653 Query 124715 GTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGT 124774 ||| |||||||| ||||| | || || ||||| |||||| ||||| ||||| || Sbjct 1652 GTGATTGAACAGGATGCCGTTGCAGGCGAACATGTCGTACGCTTCGCGATAGTTGATCAC 1593 Query 124775 CATCCAATACCCAAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 ||||| ||||| | | ||||| ||||| | || || ||||| ||||| ||||| | Sbjct 1592 AATCCAGTACCCGTACATCTTGGCACACG-CGTACGGCGAGCGGGGATAGAACGGGGTCT 1534 Query 124834 TTTCATTTTGGG 124845 |||| || |||| Sbjct 1533 TTTCGTTCTGGG 1522 Score = 118 bits (130), Expect = 1e-21 Identities = 229/331 (69%), Gaps = 9/331 (3%) Strand=Plus/Minus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || ||||| ||||| || || || || | ||| || | ||| ||||| Sbjct 1862 GTGCGTTTCGCCCGTCGCGATCACGAAATCTTCCGGCCGCTCCTGCTGCATCATCAGCCA 1803 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||||||||| |||| |||||| |||||||||||||| | || | || || || Sbjct 1802 CATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCCCAG 1743 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA--CTCAGCCAGACCGAGC--GTGATCTTGCGC 159132 ||| | | ||| | | | | | || ||| ||||||| ||||| |||||| Sbjct 1742 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCC--ACCGAGCGGGTGATTTTGCGC 1685 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 ||||| || | | || || || |||||| || || ||||| |||||| | || ||| Sbjct 1684 GTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGCG 1625 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG-AGAC 159251 |||| || || | ||||| || || | |||||||| || | | ||||| | || Sbjct 1624 AACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACAC 1565 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGTC 159282 | |||| || || ||||| || || ||| Sbjct 1564 G-CGTACGGCGAGCGGGGATAGAACGGGGTC 1535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547077629594200