Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=6534354 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || ||||| ||||| || || |||||| ||| ||| | || ||||| || ||||| Sbjct 4991481 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 4991540 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || ||||||| | || || ||| | ||| |||||| | ||| Sbjct 4991541 AAGCCGTAGAAGCAGCGCGCTTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 4991600 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || ||||||||||| |||||| |||||| || || |||| | || ||||| | Sbjct 4991601 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGG 4991660 Query 17414 TTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472 |||| |||| | || ||||||||| | || ||||| | ||| || ||||| Sbjct 4991661 CGTTCGCTCGGTTTCAGCGTCTCCCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTC 4991719 Score = 89.7 bits (98), Expect = 5e-13 Identities = 270/411 (66%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || ||||| || || || || |||| | || |||||||| || | | | || Sbjct 4990940 ATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCGAGCATATCCAC 4990999 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917 ||| || || | ||||| || ||||| || | ||||| || || || | Sbjct 4991000 CGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATGATCTCCGT 4991059 Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977 || || |||| ||||| | || |||| || |||||||| || || || ||||| Sbjct 4991060 CACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCGCA 4991119 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 || | || ||||| | ||| || ||||| || || || | || |||||| || Sbjct 4991120 GTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCC 4991179 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095 || ||||| | ||| || ||||||||||| | ||| | | ||||| |||||||| || Sbjct 4991180 ACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTG--AAGAAGATACCCTCAACC 4991237 Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTG 17154 | || || || | | || ||| | | | || | ||| | ||| ||||| ||| | Sbjct 4991238 GCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT-CGAGATCCAGTTCAG 4991296 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | |||| || || || ||| | ||| || |||||| ||||| || || Sbjct 4991297 CGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCGTTTCGATGGCATTGAA 4991347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532486688360