Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17]
2,027 sequences; 288,048,996 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 2e-18
>seq3
Length=6534354
Score = 107 bits (118), Expect = 2e-18
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| ||||| ||||| || || |||||| ||| ||| | || ||||| || |||||
Sbjct 4991481 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 4991540
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| ||||| ||||| || ||||||| | || || ||| | ||| |||||| | |||
Sbjct 4991541 AAGCCGTAGAAGCAGCGCGCTTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 4991600
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| ||||||||||| |||||| |||||| || || |||| | || ||||| |
Sbjct 4991601 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGG 4991660
Query 17414 TTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTC 17472
|||| |||| | || ||||||||| | || ||||| | ||| || |||||
Sbjct 4991661 CGTTCGCTCGGTTTCAGCGTCTCCCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTC 4991719
Score = 89.7 bits (98), Expect = 5e-13
Identities = 270/411 (66%), Gaps = 6/411 (1%)
Strand=Plus/Plus
Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857
||| || ||||| || || || || |||| | || |||||||| || | | | ||
Sbjct 4990940 ATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCGAGCATATCCAC 4990999
Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGC 16917
||| || || | ||||| || ||||| || | ||||| || || || |
Sbjct 4991000 CGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATGATCTCCGT 4991059
Query 16918 AACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCA 16977
|| || |||| ||||| | || |||| || |||||||| || || || |||||
Sbjct 4991060 CACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACATCAGGCAGGCAAAGTCGCA 4991119
Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037
|| | || ||||| | ||| || ||||| || || || | || |||||| ||
Sbjct 4991120 GTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCC 4991179
Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACC-CAGAAAAGAATATACCCTCGACG 17095
|| ||||| | ||| || ||||||||||| | ||| | | ||||| |||||||| ||
Sbjct 4991180 ACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTG--AAGAAGATACCCTCAACC 4991237
Query 17096 GATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTG 17154
| || || || | | || ||| | | | || | ||| | ||| ||||| ||| |
Sbjct 4991238 GCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT-CGAGATCCAGTTCAG 4991296
Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205
| |||| || || || ||| | ||| || |||||| ||||| || ||
Sbjct 4991297 CGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCGTTTCGATGGCATTGAA 4991347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517532486688360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |