Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq118 102 8e-17 seq3 82.4 8e-11 >seq118 Length=660226 Score = 102 bits (112), Expect = 8e-17 Identities = 184/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTG-TCGTGGAGTCC 118994 |||||||| || || || ||||| | ||||||||||| || ||| ||||||| || Sbjct 49240 TTCATGTACCGAATTTTGCCAAAGATTTCGCGCTCCTTCCA-GCCCTGATCGTGGATACC 49182 Query 118995 TGCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACT 119053 || | | ||| | || || ||||| ||||| ||||| || || | ||| ||| Sbjct 49181 CGCGATCGACCACATGCAACCGACGTACCCGTTCGGATCGCGCCCATCCAGACT-GTAGC 49123 Query 119054 TATCGTTTAAGTAGATACAGACGCTTAACGCACTT--TCCGGAGTCTTACTCCATTCCAG 119111 |||||| | ||||| | || | | || ||| || || || || |||| ||||| Sbjct 49122 GATCGTTCAGATAGATC--GCCGTCTCAAGCGCTTCCTCGGGCGTTTTCGTCCACTCCAG 49065 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTG 119171 || ||||| ||||||||||| || | | |||||||| || ||||| || | |||||| Sbjct 49064 GATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGCCCTCCTTCACCATCTG 49005 Query 119172 AAGTTGTGCGGTGTTCCATAGA 119193 || || || | |||||| ||| Sbjct 49004 CAGCTGGGCCGAGTTCCACAGA 48983 >seq3 Length=6534354 Score = 82.4 bits (90), Expect = 8e-11 Identities = 177/265 (67%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || ||||| | |||||| || ||| | || || || || ||||| Sbjct 4991481 ATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGG 4991540 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 || || |||||||| || || |||| | || || ||| | || |||||| |||| Sbjct 4991541 AAGCCGTAGAAGCAGCGCGCTTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGA 4991600 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 ||||| |||||||||||||| || ||||| || |||| | ||| ||||| | Sbjct 4991601 TTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGG 4991660 Query 16652 TTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCT 16711 |||| | | | || | | ||| || || | || ||||| | ||| || ||||| Sbjct 4991661 CGTTCGCTCGGTTTCAGCGTCTCCCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTCC 4991720 Query 16712 GGCGTCCAAAAGCTAGCCACTGCCT 16736 |||||| ||| ||| | |||| Sbjct 4991721 ACCGTCCAGAAGGAAGCTTCCGCCT 4991745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401442037640