Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 282 4e-71 seq80 136 4e-27 seq38 136 4e-27 seq82 122 9e-23 >seq3 Length=6534354 Score = 282 bits (312), Expect = 4e-71 Identities = 320/429 (75%), Gaps = 0/429 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| |||||||||| || |||||| || ||||||||| || Sbjct 4991349 TGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGAGGAAGGCGGACTGGGCGCTGAACT 4991290 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| ||||| ||| |||||||| | ||||| ||||| || || |||| Sbjct 4991289 GGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGAGG 4991230 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| || || |||||||| || || ||||| ||||| || ||||| |||| Sbjct 4991229 GTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGATGC 4991170 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||| |||||||| ||||| | ||||| || ||||| |||||||||| Sbjct 4991169 CGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTG 4991110 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| || |||||||| || |||||||| ||| || |||||| | ||||||| Sbjct 4991109 CCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGACGGAGATCA 4991050 Query 117246 TCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGC 117305 || ||| ||||| ||||||||| ||||| || | || ||||||||| | ||| Sbjct 4991049 TCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGGATATGC 4990990 Query 117306 TGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGC 117365 | || | || || || ||||||||| ||||| ||||| || ||||| | |||||| Sbjct 4990989 TCGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGCTTGCTGC 4990930 Query 117366 TCGAGCTGG 117374 ||||||||| Sbjct 4990929 TCGAGCTGG 4990921 Score = 219 bits (242), Expect = 4e-52 Identities = 220/283 (78%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || |||||||| || || ||||| || ||||||||||||| || |||| Sbjct 4991745 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 4991686 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||||| |||| ||| | ||| ||||| |||||| |||||||||||||| || ||| Sbjct 4991685 GGGAGACGCTGAAACCG-AGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCC 4991627 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || |||||| ||||| |||||||||||||| || || ||| |||||||||||||| Sbjct 4991626 GCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTT 4991567 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | || ||||| |||||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 4991566 ACGGAAGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATG 4991507 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA 116936 || ||| || |||||||||||| | ||| ||| | |||| Sbjct 4991506 TACTCGCTGCTGATCGACACGTACATCCGCGACTCGAAAGAGA 4991464 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||| | || |||||||| ||||||||||| |||||||| || || |||||| Sbjct 4991909 GAACCGCTGCTGAGGGACAACCCCCGGCGGTTCGTGATCTTCCCCATCCAGTATCCGGAC 4991850 Query 116636 ATGTGGCGCATGTACAAAAAGG 116657 || |||| |||||||| |||| Sbjct 4991849 ATTTGGCAAATGTACAAGAAGG 4991828 >seq80 Length=1009533 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| Sbjct 729422 GAAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGC 729481 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | | | |||| ||| || | ||||| || ||||| ||| | | Sbjct 729482 CTTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAG 729541 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| ||||| |||||||| || | ||||| ||| ||||| Sbjct 729542 ATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACT 729601 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| |||||||| | || || ||||| ||| |||| Sbjct 729602 ACAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCG 729641 >seq38 Length=1813042 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 65775 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 65716 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||| ||||| | || Sbjct 65715 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGAT 65656 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 65655 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 65596 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || ||||| ||| ||||| || | || || Sbjct 65595 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 65546 >seq82 Length=995134 Score = 122 bits (134), Expect = 9e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| || || || || ||||||||| | || |||||| | Sbjct 830659 AAATATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTGGAGGTCGAACC 830718 Query 40746 CACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || | | || || | | |||| || || | ||||| ||||| ||||| | | Sbjct 830719 ATCGGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAG 830777 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| || || |||||||| || | |||||||| |||| Sbjct 830778 ATCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACT 830837 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | ||||||||||||||| |||| || ||||| || Sbjct 830838 ATAACATCCAGAAGGAGTCCACTCTTCATCTGGT 830871 Score = 109 bits (120), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || |||||||| | || || || |||| | Sbjct 830891 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTTGA-GCCATC 830949 Query 40750 GACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || || || | | |||| || || | ||||| ||||| ||||| | || | Sbjct 830950 GGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATC 831008 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | |||||||| ||||| | Sbjct 831009 AGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATA 831068 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 831069 ACATCCAGAAGGAGTCCACCCTTCATCTGGT 831099 Score = 109 bits (120), Expect = 6e-19 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || |||||||| | || || || |||| | Sbjct 831119 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACGCTGGAGGTTGA-GCCATC 831177 Query 40750 GACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || || || | | |||| || || | ||||| ||||| ||||| | || | Sbjct 831178 GGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATC 831236 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | |||||||| ||||| | Sbjct 831237 AGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATA 831296 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 831297 ACATCCAGAAGGAGTCCACTCTTCATCTGGT 831327 Score = 105 bits (116), Expect = 7e-18 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || || |||||||| | || || || |||| | Sbjct 831347 ATGCAGATTTTCGTGAAAACTCTAACCGGAAAGACCATCACGCTGGAGGTTGA-GCCATC 831405 Query 40750 GACAGCG--TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | || || || | | |||| || || | ||||| ||||| || || | || | Sbjct 831406 GGATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCGCCAGATC 831464 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | |||||||| ||||| | Sbjct 831465 AGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATA 831524 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || ||||| || Sbjct 831525 ACATCCAGAAGGAGTCCACTCTTCATCTGGT 831555 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 || ||||| | |||| ||||| ||| |||||| || || ||||||||||| |||| Sbjct 827885 GAAGGCATTGCACCGGATCAGCAGCGAATCATCTTTGCCGGTAAACAGCTGGATGACGGT 827944 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 |||| | | |||||||||||||||| | | | ||| ||||||| ||| | || ||| Sbjct 827945 CGCATCATATCCGACTACAACATCCAGCACGGCTCGACGATGCATCTGGTGCTCCGGTTG 828004 Query 40909 AGGGGCGG 40916 | ||| || Sbjct 828005 AAGGGTGG 828012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206145633520