Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq24 168 6e-37 seq80 136 3e-27 seq38 118 9e-22 seq82 116 3e-21 >seq24 Length=2561919 Score = 168 bits (186), Expect = 6e-37 Identities = 528/810 (65%), Gaps = 46/810 (6%) Strand=Plus/Minus Query 133215 AGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 |||| ||||| ||||| || |||||||| | | ||||| || || || |||||| Sbjct 1154363 AGATGATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGAC 1154304 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| |||| ||||| ||||| ||||||||||| || || ||||| | ||||| ||||| Sbjct 1154303 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATT 1154244 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 |||| || || || || | | |||| ||| || || || ||| ||| | Sbjct 1154243 GGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCC 1154184 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||| |||||||| || || | || | || | | | | ||| Sbjct 1154183 CAGTTCCACAGAT--------------CCGTCGGT-TCCTTGTTCCACATCTCGTACTGC 1154139 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | ||| ||| |||||||||| ||| || ||||| || || || || | |||| Sbjct 1154138 AGAATGCCCTTGCTCACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCC 1154079 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACG 133574 | ||| ||||| || |||| ||| | |||| |||||||| ||||| ||| | Sbjct 1154078 AACTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTC-------GAATATTTGCTG 1154026 Query 133575 A---ACCT----GGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGG 133626 | | || || || ||||| ||||| | ||| || | || | ||||| |||| Sbjct 1154025 ATTTAGCTTTTGAGCCTCTTCGCTTTCGTACG-GATAGCGCATTAGGATGAACGCATCGG 1153967 Query 133627 CCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGG 133686 ||| ||||| | ||||| ||||| || | || ||||| | || | ||| | Sbjct 1153966 CCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCG 1153907 Query 133687 CCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATA--ATTTTAGT 133744 | |||||||| ||||| || ||||| ||||| |||||||| || || | |||| Sbjct 1153906 GCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCG--CGTTACTGTCTTAGC 1153849 Query 133745 CAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGAC 133804 | | |||||| || ||||| | || || || | || || |||| | Sbjct 1153848 GACTTCCTTCAGCTTTGCAAAGTCATACGTTTT---ATCTTGCTTTACAAACATGTTCAA 1153792 Query 133805 GGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCT 133863 ||| || ||| ||||| || || || ||| | | ||| || | |||| || || | Sbjct 1153791 GGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATTT 1153733 Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923 | | ||| | |||| |||||||||||||| | ||| | || || || ||||| Sbjct 1153732 CAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGC 1153673 Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT---AA 133980 || ||||||||| ||||||||||| |||||||||| || | | |||| ||| || Sbjct 1153672 AAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAA 1153613 Query 133981 ATCTAAACAAGTCTCTCGCCTTCACCTGCC 134010 | | ||| || |||||||||||||| Sbjct 1153612 ACC---ACAGATCCTGCGCCTTCACCTGCC 1153586 >seq80 Length=1009533 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||||| || | || || || || ||||||||||| ||| Sbjct 729655 TACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGG 729596 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 729595 AGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 729536 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| |||||||| || ||| || || | |||| ||||||| ||||| Sbjct 729535 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGA 729476 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | || |||||||| || ||||| || |||||||||||| Sbjct 729475 CCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 729426 >seq38 Length=1813042 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | || ||||| || | || ||||| || || |||||||| ||| Sbjct 65545 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 65604 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| |||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 65605 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 65664 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| || |||| | |||||| Sbjct 65665 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 65724 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | || || || || || ||||| || || |||||||| Sbjct 65725 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 65772 >seq82 Length=995134 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || || || ||||| |||||| ||||| ||||| Sbjct 830859 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCG 830800 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 830799 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 830740 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || |||| || | |||||||| | ||| | || || ||||||||||| Sbjct 830739 ACATTCTCAATCGTATCCGATGGT-TCGACCTCCAGGGTGATGGTCTTTCCGGTCAGAGT 830681 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| || ||||||||||| Sbjct 830680 TTTCACGAAAATCTGCAT 830663 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || || || ||||| |||||| ||||| |||||| Sbjct 831087 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCA 831028 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 831027 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 830968 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || |||| ||| ||||| | || | || || |||||||||||| Sbjct 830967 ACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTT 830908 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 830907 TTCACGAAAATCTGCAT 830891 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || || || ||||| |||||| ||||| ||||| Sbjct 831315 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCG 831256 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 831255 GCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTC 831196 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || |||| ||| ||||| | || | || || |||||||||||| Sbjct 831195 ACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTCAGAGTT 831136 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 831135 TTCACGAAAATCTGCAT 831119 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| || || || ||||| |||||| ||||| ||||| Sbjct 831543 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCG 831484 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||||||||| || || || ||||||||||| || || || Sbjct 831483 GCGAAGATCAGACGCTGCTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTC 831424 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || |||| ||| ||||| | || | || || ||||| |||||| Sbjct 831423 ACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTTAGAGTT 831364 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 831363 TTCACGAAAATCTGCAT 831347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819682626684