Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq201 111 2e-19 seq61 100 3e-16 seq53 100 3e-16 seq113 98.7 1e-15 seq79 98.7 1e-15 seq98 96.9 4e-15 seq132 95.1 1e-14 seq25 95.1 1e-14 seq11 95.1 1e-14 >seq201 Length=243930 Score = 111 bits (122), Expect = 2e-19 Identities = 94/113 (83%), Gaps = 7/113 (6%) Strand=Plus/Plus Query 60037 ACAACAAATTA-ACGTTTATGAAA----AATTTTCTCCTCGGCAGGGAATCGAACCCTGG 60091 |||||||||| || ||||| ||| |||| ||||| || | ||||||||||||| || Sbjct 243578 ACAACAAATTCTACATTTATAAAACAATAATTCTCTCCCCGACGGGGAATCGAACCCCGG 243637 Query 60092 TCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA--TTGAA 60142 ||||||||||||||||||| ||||| |||||||||||| |||||| ||||| Sbjct 243638 TCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGAAGTTGAA 243690 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||| || || ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 242201 AAAACTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 242260 Query 60116 CTCACCACTATACTACCGAGGAT 60138 || |||||||||||| ||||||| Sbjct 242261 CTGACCACTATACTATCGAGGAT 242283 >seq61 Length=1286728 Score = 100 bits (110), Expect = 3e-16 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 60057 AAAAAT-TTTCTCCTC---GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 |||||| ||||||||| | | ||||||||||||| ||||||||||||||||||||| Sbjct 1040904 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1040963 Query 60113 ATACTCACCACTATACTACCGAGGAT 60138 ||||| |||||||||||| ||||||| Sbjct 1040964 ATACTGACCACTATACTATCGAGGAT 1040989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 1041206 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1041147 Query 60122 ACTATACTACCGAGGAT 60138 ||||||||| ||||||| Sbjct 1041146 ACTATACTATCGAGGAT 1041130 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1040465 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1040524 Query 60126 TACTACCGAGGA-TTGAA 60142 ||||| |||||| ||||| Sbjct 1040525 TACTATCGAGGACTTGAA 1040542 >seq53 Length=1489982 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60058 AAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 212753 AAAATTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 212812 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 212813 CTGACCACTATACTATCGAGGA 212834 >seq113 Length=692719 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 319883 AAAAACTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 319942 Query 60118 CACCACTATACTACCGAGGA--TTGAAT 60143 |||||||||||| |||||| |||||| Sbjct 319943 GACCACTATACTATCGAGGATCTTGAAT 319970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 320939 ATTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 320998 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 320999 CACTATACTATCGAGGA 321015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 321159 ATTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 321218 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 321219 CACTATACTATCGAGGA 321235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/84 (87%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 60061 ATTTTC--TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||||| ||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 323195 ATTTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 323254 Query 60119 ACCACTATACTACCGAGG-ATTGA 60141 |||||||||||| ||||| ||||| Sbjct 323255 ACCACTATACTATCGAGGAATTGA 323278 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 318971 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 319030 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 319031 CTATACTATCGAGGA 319045 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| | ||| Sbjct 322302 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAATCAC 322361 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 322362 TATACTATCGAGGA 322375 >seq79 Length=1011660 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 |||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| || Sbjct 852986 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 853045 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 853046 CACTATACTATCGAGGA 853062 >seq98 Length=787731 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 305615 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 305556 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 305555 ACTATACTATCGAGGA 305540 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 489957 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 490016 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 490017 ATACTATCGAGGA 490029 >seq132 Length=574995 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 572418 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 572359 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 572358 CTATACTATCGAGGA 572344 >seq25 Length=2547437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 413168 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 413109 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 413108 TACTATCGAGGA 413097 >seq11 Length=3202625 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 708404 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 708463 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 708464 TACTATCGAGGA 708475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803111571560