Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq24 367 2e-96 seq3 113 6e-20 >seq24 Length=2561919 Score = 367 bits (406), Expect = 2e-96 Identities = 1199/1851 (65%), Gaps = 24/1851 (1%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || || ||||| ||||||||||| || ||||| | || | |||| ||||| ||| Sbjct 1154672 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAA 1154613 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 1154612 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 1154553 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 1154552 TGATCGATAAACGCACCACGATCTGCGGCCATTTTGATGCACGTTTTAACCGAGATCTCC 1154493 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62302 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 1154492 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 1154434 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| | || ||| ||||| || || || ||| | | | ||| || Sbjct 1154433 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 1154374 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | || ||||| |||| || || ||||| || || ||||| || | || | |||| Sbjct 1154373 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTA 1154314 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 1154313 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 1154254 Query 62483 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62542 |||||||| || |||| || | ||| | || ||||| || ||| || || || Sbjct 1154253 CGTCGGCATTGGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTT 1154194 Query 62543 TAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAAT 62602 | | |||| ||||| ||||||| |||| | || || ||||| Sbjct 1154193 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAAT 1154134 Query 62603 ACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTT 62661 || || || | | | ||| | || || || || || || || | || | | Sbjct 1154133 GCCCTTGCTCACCGGGCTGCCCT-CGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACT 1154075 Query 62662 TACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTT 62721 ||| ||||| || | || ||||| || |||||||| || || | || |||||| | || Sbjct 1154074 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTT 1154015 Query 62722 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62781 | || || ||| || | ||||| | || || ||||| || || | || || | Sbjct 1154014 GAGCCTCTTCGCTTTCGTACGGATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCA 1153955 Query 62782 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62841 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 1153954 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1153895 Query 62842 AATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGT 62900 |||| | ||| || ||||| || ||||| | | | | ||| | | || |||||||| Sbjct 1153894 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAG-CGACTTCCTTCAGC 1153836 Query 62901 TTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGA 62957 || ||| ||| | |||| |||||||||||||||| || | || |||||| Sbjct 1153835 TTTGCAAAGTCATACGTTTTATCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGA 1153776 Query 62958 TTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 || || || |||||||||| | || || || | | || |||||||| | || Sbjct 1153775 TTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATTTCAGTGCACAAGTTGG 1153718 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 ||| ||||| || || | ||| || || ||||| || || || |||||||| || | Sbjct 1153717 AACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACA 1153658 Query 63076 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63135 | ||| | || || ||||| | ||| ||||| || ||||| ||| | | | | Sbjct 1153657 GCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCG 1153598 Query 63136 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACT 63195 |||| | | | | | ||| | ||||| || |||| ||||||| Sbjct 1153597 CCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAACT 1153538 Query 63196 CGTCTCCCCAAACATTGTCCAATCTA---GGACATTCATCCGGACACATCAACGACCACT 63252 | || ||||| ||||| || | ||||| || | ||| ||||||| |||| Sbjct 1153537 CTTCGCCCCAGG---TGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACA 1153481 Query 63253 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63312 | ||| ||| ||| || ||||| || || || || ||||| || || ||| | | Sbjct 1153480 TTTCGTTCGCCTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGT 1153421 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 | | || | ||||| || || || || || || |||||||| ||| | | |||| Sbjct 1153420 CCCGTGCGCGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGAATATAT 1153361 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 | |||||| || || | || ||||| | |||||||||| ||||| || ||||||| Sbjct 1153360 CGCCATGCCAGGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGAT 1153301 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | ||| | || || || || || || | | ||| || | | ||||||||| || | Sbjct 1153300 CGACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCC 1153241 Query 63493 CATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCTATT 63551 | || || |||||||| || ||| | || || ||| | | | | || || || Sbjct 1153240 CGTTCGTGCCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCCGATG 1153182 Query 63552 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATG 63611 || || ||| || || |||| ||||| | || | ||||| |||||||| || ||| Sbjct 1153181 CCACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAATG 1153122 Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 ||||| ||| |||| | | || |||||| || | ||| |||| || |||| Sbjct 1153121 CTATCTTCGGACATGGTCAACAGGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCGCC 1153062 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 ||| | || || || ||||| ||||| | || || || |||||||| ||||| Sbjct 1153061 GCAAACATAGTTGGCGAGGCGTGGGTAAAATAACGCTCGGACAGCAGATTGTAGGTCTCG 1153002 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 || |||| || || ||| ||| || || | || || ||||| | ||||||||| Sbjct 1153001 ATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGG 1152942 Query 63792 GGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63851 || | || || ||||| || || |||| |||||| ||| |||||| |||||||| Sbjct 1152941 GGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAG 1152882 Query 63852 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || |||||||| || ||||| || ||||||||||| |||| || ||| Sbjct 1152881 CCGAAATAGTTATACCCGAAGTCGCGATCGTAAATAATGGCCGAGTTCAGC 1152831 >seq3 Length=6534354 Score = 113 bits (124), Expect = 6e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || ||||||| || || || ||||||||||| || ||||| | || | ||||| Sbjct 4991094 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 4991153 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 4991154 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 4991213 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33749 ||| |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 4991214 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 4991272 Query 33750 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33804 || || || ||||| || | ||||| || |||||| | || || || |||| || Sbjct 4991273 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCG 4991331 Query 33805 TTTCTATGGCATTAAAGAG 33823 |||| |||||||| || || Sbjct 4991332 TTTCGATGGCATTGAACAG 4991350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801641996560