Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq24 349 5e-91 seq3 95.1 2e-14 >seq24 Length=2561919 Score = 349 bits (386), Expect = 5e-91 Identities = 1218/1888 (65%), Gaps = 38/1888 (2%) Strand=Plus/Minus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 |||||||| |||||||| || | | || | || ||||| |||||||||||||| Sbjct 1154703 CTTGTCCACCGTAAACTGGATCGCATTCACGGCCGGCTTGGTACGCAGATAGTACATGCC 1154644 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||||| | || | |||| ||||| ||||| || ||| || ||| |||| | || Sbjct 1154643 AGTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATAGTTTGG 1154584 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 || || | |||||| || | ||| || |||||||| || || || | ||||| || Sbjct 1154583 CTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCACCACGATCTGCGGC 1154524 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 71029 |||||| ||| ||| || | || ||||| | ||||| || | |||| ||| | Sbjct 1154523 CATTTTGATGCACGTTTTAACCGAGATCTCCCATACCGTTTTGTACAGGTCGCG-AATTT 1154465 Query 71030 CTTCTGGAAGGTTTGTATTCT---GAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | | || | | | ||| | || |||||| | | | ||| || || | Sbjct 1154464 CCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGTTCTTCA 1154405 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || || ||| | | | ||| ||| | || |||||| | || || || | Sbjct 1154404 TGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCACCACCT 1154345 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | || || || ||||| || | | | |||||| || || ||||| || | || | Sbjct 1154344 GGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACGATT 1154285 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 |||| || || | |||||| || || || || |||||||| || |||| || || || Sbjct 1154284 CATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGGCCAACAGCAGCGAAT 1154225 Query 71267 TTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATG 71326 | | || ||| || | ||| || || || | |||| ||||| ||||||| | Sbjct 1154224 TGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCGTCG 1154165 Query 71327 GTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCATAT 71385 || | ||||| || || | || ||| | || Sbjct 1154164 GTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGGCTGCCCT-CGTAC 1154106 Query 71386 GTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAA 71445 || ||||| || || ||| |||| | ||||| ||||| || | || || || || Sbjct 1154105 GTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGTAGTAG 1154046 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 71505 ||||||||||| || | || ||| || | ||| || || ||| || | ||||| Sbjct 1154045 ATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGATAGCGC 1153986 Query 71506 AAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTA 71565 | || || ||||| || || | || || ||||| || ||||| || ||||| | | || Sbjct 1153985 ATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATA 1153926 Query 71566 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 71625 || || | ||| || || | ||||| ||||| | ||| || ||||| || ||||| Sbjct 1153925 TTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTG 1153866 Query 71626 C---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA-- 71680 | | ||| | ||| | | || ||||| || || ||| ||| | | |||| Sbjct 1153865 CGCGTTACTGT--CTTAG-CGACTTCCTTCAGCTTTGCAAAGTCATACGTTTTATCTTGC 1153809 Query 71681 -TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 ||||||||| ||||||||| | || |||||||| || || |||||||||| | ||| Sbjct 1153808 TTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATC--CTTCG 1153751 Query 71740 GCA--TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 | || | | |||||||||||| | || ||| |||||||| || | ||| || | Sbjct 1153750 ACGAGTACTCCACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCT 1153691 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 | ||||| || || || |||||||| || || || |||| || ||||| | || Sbjct 1153690 GGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCT 1153631 Query 71858 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTT 71917 | ||||| || ||||| ||| | | | ||||| | | | | | | Sbjct 1153630 GCGATTCGATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACCCT 1153571 Query 71918 CTCTTTCGTATT--GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT-- 71973 || | ||||| | ||||| | || |||||||| || ||||| | |||| || Sbjct 1153570 CTTTCTCGTACTCCGTGTACAGCTTC--TCGAACTCTTCGCCCCAGG---TGTCCGATAG 1153516 Query 71974 -CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCAT 72032 || ||||| || | ||| ||||||| |||| | | | | | || || ||||| Sbjct 1153515 ACCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTTCAT 1153456 Query 72033 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG--CTCCTCGTTT 72090 || || || || ||||| || || |||| | || || || | | |||||| || Sbjct 1153455 GAACAGGTCCGGTATCCACAGTGCG-TAAA-ACATGTCCCGTGCGCGGACCTCCTCCTTG 1153398 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || || || || || |||||||| ||| | | ||||| |||||| || || | || Sbjct 1153397 CCAGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCAGGGCTCGAGATAG 1153338 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 ||||| | |||| ||||| ||||| || |||||||| | ||| | || || || || Sbjct 1153337 ATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTG 1153278 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 || || | | ||| || | | ||| || || || || || |||||||| || || Sbjct 1153277 TAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGAGATGTACGTT 1153218 Query 72271 CCACTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 72328 || | || || ||| ||| || | | || || || || ||| || || |||| Sbjct 1153217 CCCTTCGCGCGGATACAGTGCACGTTCA--GTCCGATGCCACCGGCCGACTTTGAAATTA 1153160 Query 72329 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 72388 ||||| | || | || || ||||||||||| || ||||| || |||| | | | Sbjct 1153159 GGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACA 1153100 Query 72389 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 72448 | |||||| || | ||| |||| || |||| ||| | || || || |||| Sbjct 1153099 GGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCGCCGCAAACATAGTTGGCGAGGCGT 1153040 Query 72449 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 72508 | ||||| | || ||||| |||||||| ||||| || |||| || || ||| Sbjct 1153039 GGGTAAAATAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGC 1152980 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 ||| || || | || || ||||| | ||| ||||| || | || ||||| || | Sbjct 1152979 CATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGATTTTTCCCT 1152920 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | || |||| |||||| ||| |||||| |||||||| || |||||||| || |||| Sbjct 1152919 TGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTATACCCGAAGT 1152860 Query 72629 CTCGTTCGTAAATAATAACCGAATTGAG 72656 | || ||||||||||| |||| || || Sbjct 1152859 CGCGATCGTAAATAATGGCCGAGTTCAG 1152832 >seq3 Length=6534354 Score = 95.1 bits (104), Expect = 2e-14 Identities = 178/259 (69%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || ||||||| || || || ||||||||||| || || || | || | ||||| Sbjct 4991094 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 4991153 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || |||||||| ||||| ||||||||||| || ||||| || || | || || Sbjct 4991154 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 4991213 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || |||||||| || || || || || || || | | | ||| ||| | ||| Sbjct 4991214 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 4991272 Query 42233 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 42287 || || || ||||| || | ||||| || |||||| | || || || |||| || Sbjct 4991273 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCG 4991331 Query 42288 TTTCTATGGCATTAAAGAG 42306 |||| |||||||| || || Sbjct 4991332 TTTCGATGGCATTGAACAG 4991350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122195010520