Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq65 226 4e-54 seq24 192 9e-44 seq3 150 3e-31 seq202 140 5e-28 seq272 109 8e-19 >seq65 Length=1168139 Score = 226 bits (250), Expect = 4e-54 Identities = 402/584 (69%), Gaps = 8/584 (1%) Strand=Plus/Plus Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853 || |||| || || | ||||| |||||||||||||| || ||| || |||| | | Sbjct 37478 TTTCCGTCGAACCGTCGATGTTCCTATACATGATGGCGTTTATGCTAACGTCGGTGGTGG 37537 Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913 |||||||||| | | ||||| |||||||||||||| | |||||||| |||| ||| | | Sbjct 37538 AGCAGGCGTTCTTCCTGTACAAAGCGTGCACCGTCGATCATGGCTATTCGCACGAGATTT 37597 Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973 ||| |||||| |||||| | || ||||| || | |||||| ||| || || | Sbjct 37598 GCCTCAACATCGAGCAGTACCAGGATATCAAAAAGCAGGTCCAGGTGACGACCTCAACTT 37657 Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033 |||||||||||||| | |||| | |||||||| | | ||||| | || || | Sbjct 37658 TTCATCAGTGGAACAACATCGCCATGTACGTGGTGCCGATCGTGCTGGCCCTGTTTCTCG 37717 Query 50034 GATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAAC 50093 | ||| |||||||| || | ||| | |||| | ||||| || || || Sbjct 37718 GCGCCTGGTCCGATAGGCGTGGCCGCAAGCTGCCACTCATCCTCGGACTGGTGGGCAAGT 37777 Query 50094 TCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAGAGC---TGGCCCGTAGAGTATA 50150 | | | ||||| ||| | || |||| | || | | ||||| || ||||||| Sbjct 37778 TTGTCTACTCGGTCATGATCGTGGTGAACACGCGCATGCCCTCGTGGCCGGTCGAGTATA 37837 Query 50151 TAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAG 50210 | ||||||||||| | | ||||| | ||| ||||| ||||| | |||| || || Sbjct 37838 TCATCTACACGGCCACGATCCCGAGCGTACTGACCGGGGCCGACATTGCCATCTTTGCCT 37897 Query 50211 CGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCA 50270 | |||||||| ||||| |||| | |||| |||||| | |||||||| || | | Sbjct 37898 CCTGCTTTGCGTACATCTCCGACATCACGACGGTGGAGGAGCGCACGCTGCGCATTACGA 37957 Query 50271 TCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGT 50330 | |||| ||| |||||| ||||| ||||| | |||||| ||| |||| | |||| | | Sbjct 37958 TACTGGACGCCACCTACCTCAGCACCATGCCGATCGGTGTCGCGCTCGGCAATGTGATCT 38017 Query 50331 GGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAA 50370 || | || | | ||| ||| | ||||||||| ||||| Sbjct 38018 TCAA-CCATACGGGCAAATCGTACACGATCATGTTTATCATCAA 38060 >seq24 Length=2561919 Score = 192 bits (212), Expect = 9e-44 Identities = 382/561 (68%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCACGATACGTTACACAGGGCG 96882 || || ||||| ||||| | | ||||| |||| | |||| ||||| ||||| | Sbjct 1153252 GGTCTGGTGCCGATGCTACGCGTCTACAA--CAATACGGCACGGTACGTCGATCAGGGTG 1153309 Query 96883 GCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTG 96942 |||| || ||||| || || | ||| |||| | || || ||||| | || | || | Sbjct 1153310 GCAACAAGCGGCCTGGAGCATTCGCCATCTATCTCGAGCCCTGGCATGGCGATATATTCG 1153369 Query 96943 ACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTT 97002 | ||| |||| || |||||| ||||| || |||| || || ||||| |||||| Sbjct 1153370 AGTTTCTCGATCTGAAGAAAAACACTGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTT 1153429 Query 97003 ATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTA-CTGGAGC 97061 | ||||| ||| | || || ||||||||||||| || | | || | | |||||| Sbjct 1153430 ACGCACTGTGGATACCGGACCTGTTCATGAAGCGTGTGGA-GGCGAACGAAATGTGGAGC 1153488 Query 97062 CTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCC 97121 || |||||||| || | |||||||| || || ||||||||||||||| ||| Sbjct 1153489 CTGATGTGCCCGCACGATTGTCCCGGTCTATCGGACACCTGGGGCGAAGAGTTCGAGAAG 1153548 Query 97122 AAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTG 97181 |||||||| |||||| ||||||| || | || | | || | || | || ||| Sbjct 1153549 CTGTACACGGAGTACGAGAAAGAGGGTCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTG 1153608 Query 97182 TGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGAT 97241 ||| || ||| | | ||||| || || || |||||||| || ||||||||| Sbjct 1153609 TGGTTTGCGATCATCGAATCGCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGAT 1153668 Query 97242 ACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGC 97301 | ||||| || || ||||| | | | ||||||||||| | ||||| ||||| Sbjct 1153669 GCTTGCAATCGTAAAAGTAACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTGC 1153728 Query 97302 ACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTC 97361 || |||||||| |||||| | || ||| ||| || || ||| |||||| ||| || Sbjct 1153729 ACTGAAATTGTGGAGTACTCGTCGAAGGATGAGGTAGCGGTATGCAATCTGGCCTCGATC 1153788 Query 97362 AATCTGCCCAAGTTTGTAGAG 97382 || || ||||||| || Sbjct 1153789 GCCTTGAACATGTTTGTAAAG 1153809 Score = 122 bits (134), Expect = 1e-22 Identities = 322/489 (66%), Gaps = 2/489 (0%) Strand=Plus/Plus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 ||||| | | || || ||||| |||| || ||||| |||||| |||| | ||| | Sbjct 1154213 ACGGTATTCGCAATTCGCTGCTGTTGGCCCCAATGCCGACGGCTTCCACGGCACAAATTC 1154272 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 | ||||| |||||| || || |||| |||||| ||| | ||| | || ||| || Sbjct 1154273 TCGGCAACAATGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGTTGT 1154332 Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGC-TCAATCTG 97952 | || ||||| || || ||| || | | | || ||| | | | | |||| Sbjct 1154333 CGGGCGAGTTCCAGGTGGTGAACCATCATCTTCTGCAGGATTTG-ACCAACATGGGTCTG 1154391 Query 97953 TGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACC 98012 ||| | |||||| | || ||| ||||||||| || || ||||| ||| | Sbjct 1154392 TGGGATCTCGACATGAAGAACGAAATTCTGTCCAACAATGGATCGATCCAAAAGATTGCG 1154451 Query 98013 ATCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACG 98072 || ||| | || | ||| | ||||| || || |||||||| || || ||| Sbjct 1154452 GCTATACCGCAGGAAATTCGCGACCTGTACAAAACGGTATGGGAGATCTCGGTTAAAACG 1154511 Query 98073 CTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTG 98132 ||| | ||||| || || | |||| | || || ||| ||||||||||| | Sbjct 1154512 TGCATCAAAATGGCCGCAGATCGTGGTGCGTTTATCGATCAGTCGCAATCGTTCAACATT 1154571 Query 98133 TACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAG 98192 |||| || ||||| | ||| | |||| ||||| || || |||| ||||| | | Sbjct 1154572 CACGTCGCGGAGCCAAACTATGGCAAGCTGACGTCGATCCATTTCTACGGCTGGAAGATG 1154631 Query 98193 GGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTT 98252 || | || || ||||||||||||||| | || ||| ||||| ||||| || | ||| Sbjct 1154632 GGGTTGAAAACTGGCATGTACTATCTGCGTACCAAGCCGGCCGTGAATGCGATCCAGTTT 1154691 Query 98253 ACGGTGGAC 98261 ||||||||| Sbjct 1154692 ACGGTGGAC 1154700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 134241 CTCACAAATCAGTTGTGCGATGCGATCACCCTTTGACACTACAAAGTCGTCATCGGAATG 134300 ||| ||||| | ||||||||||||||||| || ||| |||||| || || ||||| Sbjct 2173638 CTCGCAAATAAACTGTGCGATGCGATCACCTTTCTTAACTTCAAAGTTGTTCTCAGAATG 2173697 Query 134301 GTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGAC 134360 || || || || ||||| | ||| || ||||| ||| ||||||||||| || || Sbjct 2173698 ATTGAACAGTACTACTCCGACGTTGCCCCGGTAGTCCTCGTCGACGACACCGGCGCCCAC 2173757 Query 134361 GTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTTC 134420 ||||| || || | |||| ||| || ||||| | || || ||||||||||| Sbjct 2173758 ATCGATGAAGTTTTTCACGGCCAAACCGGAACGTGGAGCCACCCGGCCATAGCAACCTTC 2173817 Query 134421 CGGGATCAGTACGCCGAGGTCTGTGTTGACGAGC 134454 ||| | | | || || ||| || | |||||| Sbjct 2173818 CGGCACCTGGACCTGGATGTCGGTCATCACGAGC 2173851 >seq3 Length=6534354 Score = 150 bits (166), Expect = 3e-31 Identities = 200/278 (72%), Gaps = 11/278 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || ||||| |||||||| |||||||| ||||||||||||||| || | || | Sbjct 4991745 AGGCGGAAGCTTCCTTCTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACT 4991686 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTC 125153 ||||||| | |||||| |||||| | || || || ||| | |||||||| Sbjct 4991685 GGGAGACGC-------TGAAACCGAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTC 4991633 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 ||||||| ||||| || ||||| ||||| |||||| || ||| ||| || ||| || Sbjct 4991632 TTTGCCGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTG 4991573 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 || | || | | ||||| ||||| ||||| || ||| || || |||||| Sbjct 4991572 CAGGTTACGGAAGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGC 4991513 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 || |||||||| ||||| |||| |||||| ||||| Sbjct 4991512 GAGATGTACTCGCTGCTGATCGACACGTACATCCGCGA 4991475 Score = 136 bits (150), Expect = 6e-27 Identities = 236/341 (69%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||||||||| || || ||||| |||||||| ||||| || || || ||||| ||| Sbjct 4991251 GTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGG 4991192 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| || || ||||| ||||| || | |||||| | || || || ||| Sbjct 4991191 CTGAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGAC 4991132 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 || || || ||||| ||||||||| || |||| ||| |||||| |||| Sbjct 4991131 GAAGGGCTGCACTGCGACTTTGCCTGCCTGATGTT---CAAGTATCTG--------GTGC 4991083 Query 125610 AG-ATCCAGCGATGAAAAG-GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 || | || ||| | | | || | | || | |||||| ||| ||| || || | Sbjct 4991082 AGAAGCCGTCGAAGGAGCGCGTGACGGAGATCATCCGCGATGCGGTGCTGATCGAGCAGG 4991023 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || || | | || ||||| ||| | ||||||||||| | || |||| Sbjct 4991022 AGTTCCTGACGAAGGCACTGCCGGTGGATATGCTCGGCATGAACTGTGATCTGATGTCGC 4990963 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||||||| ||||||||||| ||||| | ||| |||| || Sbjct 4990962 AGTACATTGAGTTTGTGGCCGATCGCTTGCTGCTCGAGCTG 4990922 >seq202 Length=238372 Score = 140 bits (154), Expect = 5e-28 Identities = 313/471 (66%), Gaps = 12/471 (3%) Strand=Plus/Minus Query 127101 TTTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGT 127160 ||| ||||| ||||| ||||| || || || || | | ||||| |||||||| || | Sbjct 191042 TTTCCGGTAGAAGATTACTCCTGCACGGGGGCCACGTAATGTCTTATGCGTTGTGGTACT 190983 Query 127161 CACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAAT 127220 |||| || ||| || || || ||||| ||| | |||||| || || | ||| Sbjct 190982 AACAACATCCGCATATTCGAATGGCGACGGAATCACTCCGGCCGCAACCAGCCCAGAAAT 190923 Query 127221 GTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCT 127280 ||||| ||||| || | || | | || | | |||||| |||||||| | | | Sbjct 190922 ATGTGCCATATCTGCGAACAAATATGCACCATTTTGGTTGGCAATTTCTCGGAACCTTTT 190863 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 ||||||| | || | ||||| | || || || |||| | |||||||| || Sbjct 190862 GTAGTCCAGACAACGCGAGTAGCACGAAATACCAGCAATAATTACTTTCGGTTTGAAGAG 190803 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400 || |||| | | ||| | || |||| | ||||| ||||| || || || Sbjct 190802 GCGCGCTGTCTCCTCCATCTTGTCGTAATCGATCAACCCAGTAACTGGATCGACTTTATA 190743 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGA--------CACGTTGCG----GAATCC 127448 |||||||||||||| || | ||||||||| || | ||| | ||| || Sbjct 190742 TGGCATGCTTTCGAAGAAAATTGATGTAGCAGAGATTTTTTTAGTTTGAGTCATGAAACC 190683 Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508 ||| || | || || ||||| || |||||||| |||||||||| ||||| |||| || Sbjct 190682 GTGGGTTAAATGACCACCGTCTGGTAGATCGAGGCCCATGATTCGTCCGTGTGGTTCAAT 190623 Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 | |||||||||| ||||| || || || || || |||||||| || Sbjct 190622 AAGAGCAGTGTACACAGCAAAATTTGCTGGTGAACCAGAATACGGTTGAAC 190572 >seq272 Length=153155 Score = 109 bits (120), Expect = 8e-19 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||| |||| || || || || || |||||| | |||| || ||| || | Sbjct 12508 GGGGATTTGGGCCCGGTATATGGGTTTCAGTGGCGCCACTTTGGTGCCACCTACAAAACA 12567 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTC 70184 ||| | ||| || || | |||||||| | ||||| || | || | | || |||| Sbjct 12568 TGCCACGAC-GATTACACAGGTCAGGGAATAGATCAGCTGGCTGA-AGTGATCGACAAAA 12625 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | |||| |||||| || | | ||| | |||||| | |||||||| | ||| | | Sbjct 12626 TTAAGAACAATCCCTACGACCGTCGAATCATCATGTGCGCTTGGAATCCCTCTGATATTC 12685 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC--TCGTACGATGGCAA 70302 | ||||| |||||||| || ||||| ||||| ||||||| | | || ||||| | Sbjct 12686 CTAACATGGCGCTACCACCATGCCACTGCTTGGCACAGTTTTTCGTTAGT--GATGGAGA 12743 Query 70303 ATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACAT 70362 |||| || |||||||| | |||||| | || || || || ||||||||||| Sbjct 12744 GCTGTCGTGTCAGATGTATCAACGTTCGGCCGACGTAGGTCTGGGCGTGCCCTTTAACAT 12803 Query 70363 TGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 ||| ||||| || || |||| |||||||| || || | ||||| || || Sbjct 12804 TGCCAGCTACTCCTTGCTGACTCACATGATCGCGCATGTCACCGGACTAAA 12854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741040423412520