Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq80 104 2e-17 seq38 104 2e-17 seq82 102 7e-17 >seq80 Length=1009533 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | |||||| || ||||| ||||||||||| || | | | || || | |||| Sbjct 729636 CACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CGACCATCCT 729578 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | |||||||||| Sbjct 729577 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCT 729518 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||| | | | | || || || | || ||| ||| | ||| ||||| | Sbjct 729517 GGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCT 729458 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||| |||||||| ||||||||||| Sbjct 729457 TGCCGGTGAGTGTTTTCACGAAAATCTGCAT 729427 >seq38 Length=1813042 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | |||||| || |||||| || |||||||| || | Sbjct 65545 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 65604 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || | |||||||||||||| ||| || | || | |||||||||||| ||| Sbjct 65605 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 65664 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || ||| ||| | | | | || ||||| | | ||| Sbjct 65665 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 65724 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| ||||| ||||| ||||| || || ||||||||| || Sbjct 65725 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 65776 >seq82 Length=995134 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || || | || || | ||||||||||| Sbjct 831322 ATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 831263 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 831262 CTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 831203 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| ||| | || ||||| || ||||| Sbjct 831202 CGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGT 831143 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 831142 CAGAGTTTTCACGAAAATCTGCAT 831119 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || || | || || | ||||||||||| Sbjct 831550 ATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 831491 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 831490 CTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTT 831431 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| ||| | || ||||| || ||||| Sbjct 831430 CGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGT 831371 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 831370 TAGAGTTTTCACGAAAATCTGCAT 831347 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || || | || || | ||||||||||| Sbjct 830866 ATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 830807 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 830806 CTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 830747 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | || ||| | || ||||| || ||||| Sbjct 830746 CGCCTTCACATTCTCAATCGTATCCGATGGTTCGACCTCCAGGGTGATGGTCTTTCCGGT 830687 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 830686 CAGAGTTTTCACGAAAATCTGCAT 830663 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||| || ||||| || || | || || | ||||||||||| Sbjct 831094 ATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTG 831035 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 831034 CTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTT 830975 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | | || ||||| | | ||| ||| | || ||||| || ||||| Sbjct 830974 CGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGT 830915 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| ||||||||||| Sbjct 830914 CAGAGTTTTCACGAAAATCTGCAT 830891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421240793384027