Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq62 93.3 2e-14 seq68 91.5 8e-14 seq4 86.0 3e-12 >seq62 Length=1266161 Score = 93.3 bits (102), Expect = 2e-14 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||||| || |||||| ||| || ||| | || |||||||||| |||||||||||| Sbjct 742837 TAGAAGCAAGAAAAAAGCAATTTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGT 742896 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||| |||| |||||||| | |||| Sbjct 742897 TATTAGCACGACGCTCTAACCAGCTGAGCTATGGAGCCG 742935 >seq68 Length=1109118 Score = 91.5 bits (100), Expect = 8e-14 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||||| || | |||| | || |||||||||| ||||||||||||||||||| Sbjct 352850 AATAAAAAAGAAAGAACTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGC 352791 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||| |||| |||||||| | ||||| Sbjct 352790 ACGACGCTCTAACCAGCTGAGCTATGGAGCCGT 352758 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 354746 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 354687 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| | |||| Sbjct 354686 TGAGCTATGGAGCCG 354672 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 289260 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 289319 Query 11516 TGAGCTA 11522 ||||||| Sbjct 289320 TGAGCTA 289326 >seq4 Length=5360675 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1053578 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1053519 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| | ||||| Sbjct 1053518 TGAGCTATGGAGCCGT 1053503 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1056528 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1056469 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 1056468 CTGAGCTA 1056461 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1057752 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1057693 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 1057692 CTGAGCTA 1057685 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1058830 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 1058771 Query 11515 CTGAGCTA 11522 |||||||| Sbjct 1058770 CTGAGCTA 1058763 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1057329 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1057270 Query 11516 TGAGCTA 11522 ||||||| Sbjct 1057269 TGAGCTA 1057263 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1094680 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1094739 Query 11516 TGAGCTA 11522 ||||||| Sbjct 1094740 TGAGCTA 1094746 Score = 82.4 bits (90), Expect = 4e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1097201 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1097260 Query 11516 TGAGCTA 11522 ||||||| Sbjct 1097261 TGAGCTA 1097267 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484740105052