Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq24 381 7e-101 seq3 113 6e-20 >seq24 Length=2561919 Score = 381 bits (422), Expect = 7e-101 Identities = 1204/1852 (65%), Gaps = 28/1852 (2%) Strand=Plus/Minus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || || ||||| ||||||||||| || ||||| | || | |||| ||||| ||| Sbjct 1154672 GCCGGCTTGGTACGCAGATAGTACATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAA 1154613 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 || || ||| || ||| ||| | || || || | || || || | ||||| Sbjct 1154612 TGGATCGACGTCAGCTTGCCATAGTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGAC 1154553 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 |||||||| || || || | ||||| |||||||| ||| ||| || | || ||| Sbjct 1154552 TGATCGATAAACGCACCACGATCTGCGGCCATTTTGATGCACGTTTTAACCGAGATCTCC 1154493 Query 62196 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAGGTTTGTATTCT---GAATGGA 62251 || | ||||| || | |||| ||| || | || | | | ||| | || || Sbjct 1154492 CATACCGTTTTGTACAGGTCGCG-AATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGA 1154434 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| | | || ||| ||||| || || || ||| | | | ||| || Sbjct 1154433 TCCATTGTTGGACAGAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAA 1154374 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | | || ||||| | || || || || || || || ||||| || | || | |||| Sbjct 1154373 ATCCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTA 1154314 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 || || || ||||| || | ||| ||||| || || | |||||| || || || || Sbjct 1154313 AACGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGC 1154254 Query 62432 AGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTT 62491 |||||||| || |||| || | ||| | || ||||| || ||| || || || Sbjct 1154253 CGTCGGCATTGGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTT 1154194 Query 62492 TAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAAT 62551 | |||| ||||| ||||||| |||| | || ||||| Sbjct 1154193 CAACTCGGCCCAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAAT 1154134 Query 62552 ACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 62610 || || || | | | ||| | || || ||||| || || || | || | | Sbjct 1154133 GCCCTTGCTCACCGGGCTGCCCT-CGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACT 1154075 Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 |||| ||||| || | || ||||| || ||||||||||| || | || |||||| | || Sbjct 1154074 CACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTT 1154015 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 | || || ||| || | ||||| | || || ||||| || || | || || | Sbjct 1154014 GAGCCTCTTCGCTTTCGTACGGATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCA 1153955 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 | || || ||||| || || || | | |||| ||| | ||| || || | ||||| | Sbjct 1153954 CGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGT 1153895 Query 62791 AATTAATATCTATAATTTTATTGAGATTTCT-GACAATTACTTTGACCACATCCTTCAGT 62849 |||| | ||| || ||||| || ||||| | | | | ||| | | || |||||||| Sbjct 1153894 AATTGACATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAG-CGACTTCCTTCAGC 1153836 Query 62850 TTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGA 62906 || ||| ||| | |||| ||||||||||||||||||| | || |||||| Sbjct 1153835 TTTGCAAAGTCATACGTTTTATCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGA 1153776 Query 62907 TTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 62964 || || || |||||||||| | || || || | | || |||||||| | || Sbjct 1153775 TTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATTTCAGTGCACAAGTTGG 1153718 Query 62965 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63024 ||| ||||| || || | ||| || || ||||| || || || |||||||| || | Sbjct 1153717 AACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACA 1153658 Query 63025 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63084 | ||| | || || ||||| | ||| ||||| || ||||| ||| | | | | Sbjct 1153657 GCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATCCTGCG 1153598 Query 63085 CCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACT 63144 |||| | | | | | ||| | ||||| || |||| ||||||| Sbjct 1153597 CCTTCACCTGCCGCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAACT 1153538 Query 63145 CGTCTCCCCAAACATTGTCCAAT---CCAGGACATTCATCCGGACACATCAACGACCACT 63201 | || ||||| ||||| || || ||||| || | ||| ||||||| |||| Sbjct 1153537 CTTCGCCCCAGG---TGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACA 1153481 Query 63202 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 63261 | ||| ||| ||| || ||||| || || || || ||||| || || |||| | || Sbjct 1153480 TTTCGTTCGCCTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGCG-TAAA-ACAT 1153423 Query 63262 CTCTGGTTCTATGT--TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63319 || || | | ||||| || || || || || || |||||||| ||| | | || Sbjct 1153422 GTCCCGTGCGCGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGAATAT 1153363 Query 63320 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63379 ||| |||||| || || | || ||||| | |||||||||| ||||| || ||||| Sbjct 1153362 ATCGCCATGCCAGGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTG 1153303 Query 63380 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATAT 63439 ||| | ||| | || || || || || || | | ||| || | | ||||||||| || Sbjct 1153302 ATCGACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAAT 1153243 Query 63440 ACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACCTA 63498 || || || |||||||| || |||| | || || ||| | | | | || || | Sbjct 1153242 CCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCGCGGATAC-AGTGCACGTTCAGTCCGA 1153184 Query 63499 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTA 63558 | || || ||| || || |||| ||||| | || | ||||| ||||| ||||| | Sbjct 1153183 TGCCACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAA 1153124 Query 63559 TGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 63618 ||||||| ||| |||| | | || |||||| || | ||| |||| || ||| Sbjct 1153123 TGCTATCTTCGGACATGGTCAACAGGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCG 1153064 Query 63619 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63678 | ||| | || || || ||||| ||||| | || || || |||||||| |||| Sbjct 1153063 CCGCAAACATAGTTGGCGAGGCGTGGGTAAAATAACGCTCGGACAGCAGATTGTAGGTCT 1153004 Query 63679 CAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 63738 | || |||| || || ||| ||| || || | || || ||||| | |||||||| Sbjct 1153003 CGATCGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCT 1152944 Query 63739 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAA 63798 | || | || ||||| || || || |||| |||||| ||| |||||| ||||||| Sbjct 1152943 GGGGGCGCTCGACGATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAA 1152884 Query 63799 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || |||||||| || ||||| || ||||||||||| ||||||| || Sbjct 1152883 AGCCGAAATAGTTATACCCGAAGTCGCGATCGTAAATAATGGCCGAGTTCAG 1152832 >seq3 Length=6534354 Score = 113 bits (124), Expect = 6e-20 Identities = 182/259 (70%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || ||||||| || || || ||||||||||| || ||||| | || || ||||| Sbjct 4991094 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTC 4991153 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || |||||||| ||||| ||||||||||| || ||||| || || | ||||| Sbjct 4991154 GAGAAGGTGAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTA 4991213 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 || |||||||| || || || ||||| || || | | | ||| ||| | ||| Sbjct 4991214 CCGCTGAAGAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGC- 4991272 Query 33472 CTGTCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 || || || ||||| || | ||||| || |||||| | || || || |||| || Sbjct 4991273 CT-TCTTGCTCGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCG 4991331 Query 33527 TTTCTATGGCATTAAAGAG 33545 |||| |||||||| || || Sbjct 4991332 TTTCGATGGCATTGAACAG 4991350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931416075320