Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq24 224 3e-53 seq272 105 2e-17 >seq24 Length=2561919 Score = 224 bits (248), Expect = 3e-53 Identities = 529/787 (67%), Gaps = 14/787 (2%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 ||||| || | || || || ||||| ||||| ||| | ||||| ||||||||||| ||| Sbjct 1152916 ATCAAGGGAAAAATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATC 1152975 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| || ||| | ||||| ||||| || || || || || || | ||| || Sbjct 1152976 CATGGCGAGGACATCGATGCAGCGATCGAGACCTACAATCTGCTGTCCGAGCGTTATTTT 1153035 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || |||||| ||||||| |||| || | || | ||| ||| | || || || Sbjct 1153036 ACCCACGCCTCGCCAACTATGTTTGCGGCGGCTACGCAGCGTCCCCAGCTTTCGTCCTGT 1153095 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 || || | | ||| || ||| ||| ||||| |||| |||||||| ||| | || Sbjct 1153096 TTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACACTGAAGCAGTGC 1153155 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACA 363728 || || ||||| ||| || || || || || | | || | ||| | | || || | Sbjct 1153156 GCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACG-TGCACTGTATCCGCGCGAA 1153214 Query 363729 GAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTG 363787 | | ||||| |||||| | ||||| || || || ||||| || ||||| || | Sbjct 1153215 GGGAACGTACATCTCCGGCACGAACGGGATT-TCAAACGGTCTGGTGCCGATGCTACGCG 1153273 Query 363788 TGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTG 363847 | | ||||||| || |||||||||| |||||||| ||||| || || || | Sbjct 1153274 TCTACAACAATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAGCATTCG 1153333 Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACA 363907 | || ||||||||||| |||| |||||| || |||||||| || || |||||||| Sbjct 1153334 CCATCTATCTCGAGCCCTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGAAAAACA 1153393 Query 363908 CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 | || || ||||| | || ||||| || |||| || ||||| ||| | | |||| | Sbjct 1153394 CTGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTGTGGATACCGGACCTGT 1153453 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAA--TTGGTCACTCTTTTGCCCACACGAATGTCC 364025 | |||||||| |||||||| | | ||| ||| || | ||||| ||||| ||||| Sbjct 1153454 TCATGAAGCGTGTGGAGGC--GAACGAAATGTGGAGCCTGATGTGCCCGCACGATTGTCC 1153511 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACT--ATGTTGCTCTATACGAAAAGTATGAATCG 364083 ||||| || || ||||| || || | | ||| || ||| |||| || Sbjct 1153512 CGGTCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACG--GAGTACGAGAAA 1153569 Query 364084 GAGGGAAAGGCTCGTAAGACA-ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| | | | | || | || ||| | || |||||||| ||||| || || Sbjct 1153570 GAGGG-TCGCTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGGTTTGCGATCATCGAATC 1153628 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 |||| | || || || ||| || ||| ||||||| ||| | ||||| || || || Sbjct 1153629 GCAGGTGGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAA 1153688 Query 364203 CCAGCAG 364209 ||||||| Sbjct 1153689 CCAGCAG 1153695 >seq272 Length=153155 Score = 105 bits (116), Expect = 2e-17 Identities = 235/341 (69%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 111488 AGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAAC 111547 ||| ||| | || || || || || ||||| ||||||||||||||||| |||||||| Sbjct 12507 AGGGGATTTGGGCCCGGTATATGGGTTTCAGTGGCGCCACTTTGGTGCCACCTACAAAA- 12565 Query 111548 CATG-CACGACTCATATGATTCA---CAGGGAACTGATCA-ATTACAGAATGTCATTGAT 111602 |||| |||||| || | || ||||||| ||||| | | ||| || || || Sbjct 12566 CATGCCACGAC---GATTACACAGGTCAGGGAATAGATCAGCTGGCTGAA-GTGATCGAC 12621 Query 111603 CAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGC 111661 ||||||||||||| ||| || | ||||| || || ||| | || ||||| || || Sbjct 12622 AAAATTAAGAACAATCCCTACGAC-CGTCGAATCATCATGTGCGCTTGGAATCCCTCTGA 12680 Query 111662 ATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACG 111720 | || ||||| || |||||||| || || | || ||||||| || || | Sbjct 12681 TATTCCTAACATGGCGCTACCACCATGCCA-CTGCTTGGCACAGTTTTTCGTTAGTGATG 12739 Query 111721 GGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTA 111780 | ||| || || || |||||||| || || || || | ||||| || || || |||| Sbjct 12740 GAGAGCTGTCGTGTCAGATGTATCAACGTTCGGCCGACGTAGGTCTGGGCGTGCCCTTTA 12799 Query 111781 ATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 | ||||| || ||| | | || ||| | | ||||| ||| Sbjct 12800 ACATTGCCAGCTACTCCTTGCTGACTCACATGATCGCGCAT 12840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319750685114