Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq82 91.5 1e-13 seq38 87.8 1e-12 >seq82 Length=995134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| ||||| | || ||| | | ||| Sbjct 830874 AGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 830815 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || || ||||| || || || | ||||| ||||| Sbjct 830814 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 830755 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | || || || || |||| ||||||||| Sbjct 830754 TGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGACCTCCAGGGTGATGGTC 830695 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 ||||||||||| ||||| || ||||||||||| || || Sbjct 830694 TTTCCGGTCAGAGTTTTCACGAAAATCTGCATATTTTA 830657 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| ||||| | || ||| | | ||| Sbjct 831102 AGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 831043 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || || ||||| || || || | ||||| ||||| Sbjct 831042 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 830983 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | || || ||||| |||| |||||||| Sbjct 830982 TGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTC 830923 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| ||||| || ||||||||||| Sbjct 830922 TTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| ||||| | || ||| | | ||| Sbjct 831330 AGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 831271 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || || ||||| || || || | ||||| ||||| Sbjct 831270 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 831211 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | || || ||||| |||| |||||||| Sbjct 831210 TGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTC 831151 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||||||| ||||| || ||||||||||| Sbjct 831150 TTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || ||||| ||||| | || ||| | | ||| Sbjct 831558 AGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 831499 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | || || ||||| || || || | ||||| ||||| Sbjct 831498 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGAATTCCCTCCTTGTCC 831439 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | |||||| | | | || || ||||| |||| |||||||| Sbjct 831438 TGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTC 831379 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||| || ||||| || ||||||||||| Sbjct 831378 TTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 >seq38 Length=1813042 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || || |||||||| || ||||||||||||| | Sbjct 65546 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 65605 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || ||||| || | || || ||||| || || || Sbjct 65606 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 65665 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | | |||||| | | | || || |||||| Sbjct 65666 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 65725 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | ||| ||||| || || || || |||||||| || |||||||| ||| Sbjct 65726 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 65776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077992680730