Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq117 170 1e-37 seq80 111 1e-19 seq82 100 2e-16 seq607 98.7 7e-16 seq38 96.9 2e-15 >seq117 Length=666810 Score = 170 bits (188), Expect = 1e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| ||| ||||||| ||||| |||||| | ||| |||||||| ||||| ||||| Sbjct 76932 ATGGCTACCGTGAACGTGAATCGCAATGTGACCGACATCTTCTACCGGTACAAGATGCCC 76873 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| ||| ||||| ||||||||||||||||| || || || || || || |||||| Sbjct 76872 CGCATCAACGCGAAGGTAGAGGGTAAGGGAAACGGCATCAAGACGGTGATCGTGAACATG 76813 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | || || || ||| |||| ||||| || |||||||||||||| || || || ||| Sbjct 76812 GCCGATGTGGCGCGCGCGATCGGCCGCCCGGCAACCTACCCGACGAAGTACTTTGGCTGC 76753 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || ||||| ||||| ||||| || || Sbjct 76752 GAGCTGGGAGCTCAAACGCAATTTGACCATAA 76721 Score = 158 bits (174), Expect = 8e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| |||||||| || ||||| ||||| | | ||||||||||||||| | || ||| Sbjct 76652 AACGAACGCTTCATTGTGAACGGTTCGCACGATGCGGCCAAGCTGCAGGACCTGCTCGAC 76593 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || || || ||||||||||||||||| | ||| ||||| ||||||||||| || || || Sbjct 76592 GGGTTCATCCGCAAGTTTGTGCTGTGCCCGGAGTGCGACAACCCGGAGACGGATCTGATC 76533 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || |||||| || ||||| ||||||||||| |||||||| | ||| || | Sbjct 76532 GTCTCGTCCAAGAAGGGTACGATCTCGCAGGGCTGCAAGGCGTGCGGCTTCCACGGGCCG 76473 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || | ||||| | ||||| ||||| | ||||| || || Sbjct 76472 CTCGAGGTGAACCACAAGGTGAACACGTTCATCATCAAGAACCCGCC 76426 >seq80 Length=1009533 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 38081 CCAATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATT 38140 ||||| |||||||| | | |||| ||||| |||||| || ||||| ||||| || Sbjct 729663 CCAATACTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTT 729604 Query 38141 GTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTG 38200 ||| || || | | || | || || | || || ||||| || || || || || || Sbjct 729603 GTAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG 729544 Query 38201 ATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCC 38260 ||| | ||| | |||||| |||||| || ||| ||||||||||| || || || Sbjct 729543 ATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGA 729484 Query 38261 ACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || || | ||| || || || || || | ||||||||||| ||||||||||| Sbjct 729483 AGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 729424 Query 38321 T 38321 | Sbjct 729423 T 729423 >seq82 Length=995134 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||| |||||||||| |||||| || || || || || | Sbjct 830891 TACCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCG 830832 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || |||||||| || || || || || ||||| | | Sbjct 830831 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCG 830772 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| | ||||| ||| | Sbjct 830771 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGA 830712 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | || || || || || |||| ||||||||||| |||||||| ||||| Sbjct 830711 CCTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATTTTA 830657 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||| |||||||||| |||||| || || || || || | Sbjct 831347 TACCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCG 831288 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || |||||||| || || || || || ||||| | | Sbjct 831287 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCG 831228 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| | ||||| |||| Sbjct 831227 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA 831168 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||||||||||| |||||||| Sbjct 831167 CCTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||| |||||| ||| |||||| || || || || || | Sbjct 831119 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCG 831060 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || ||||| || || || || || || ||||| | | Sbjct 831059 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCG 831000 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||||||||||| | ||||| |||| Sbjct 830999 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA 830940 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||||||||||| |||||||| Sbjct 830939 CCTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38087 ATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATC 38146 ||| ||||| | || ||| | |||| |||||||||| |||||| || || || || || Sbjct 831577 ATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTC 831518 Query 38147 AGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 |||| || | || || | || |||||||| || || || || || ||||| | Sbjct 831517 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGG 831458 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | || || |||||| || || ||||||||||| | ||||| || Sbjct 831457 CGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTC 831398 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || | || || || || || || | ||||||||||| |||||||| Sbjct 831397 AACCTCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 >seq607 Length=26462 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 8287 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCAT 8346 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||| ||| Sbjct 8347 GGTGGTATTTAGCTTTA 8363 >seq38 Length=1813042 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| ||||| |||||| || |||||| || || ||||| || || Sbjct 65545 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 65604 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||| || || || || || ||||| | || Sbjct 65605 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 65664 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || || || |||||| || || ||||||||||| || ||||| || || Sbjct 65665 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 65724 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | ||||| || |||||||| | |||||| ||||| |||||||| || Sbjct 65725 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 65775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938925443437