Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 178 2e-39 seq82 152 9e-32 seq38 152 9e-32 seq80 150 3e-31 seq31 84.2 4e-11 >seq3 Length=6534354 Score = 178 bits (196), Expect = 2e-39 Identities = 394/587 (67%), Gaps = 8/587 (1%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGC---TCAGGAGACTGGAGCATTTTCCACATTGCT 268267 || ||||| ||||| || || || ||| || | ||| | ||| |||||| || Sbjct 5694309 CCCGTTGCGATCACGAAATCTTCCGGCCGCTCCTG---CTGCATCATGAGCCACATCGCC 5694365 Query 268268 TCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGG 268327 || || || ||| ||| |||||||| || ||||| | ||| | || || || |||| Sbjct 5694366 TCTACGTAATCCTTCGCGTGGCCCCAGTCACGCTTCGAGTCGAGATTGCCCAGCTCCAGG 5694425 Query 268328 CATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAAC 268387 | | ||||| ||||||| | || | ||| |||||||| || |||||||| Sbjct 5694426 TACTCCTGCTGGCCGAGCGAAATCTTGGCCACCGAGCGGGTGATTTTGCGCGTCACGAAA 5694485 Query 268388 GTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCCA 268447 |||| || || | || |||||| ||||| |||||||||||||| |||||||| | Sbjct 5694486 TTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGCGAACATATCG 5694545 Query 268448 TATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGA 268507 || || || || ||||| | || ||||||| | ||||||| ||| |||||||| Sbjct 5694546 TACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACATCTTGGCACACGCGTACGGC 5694605 Query 268508 GAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAGC 268567 || || |||| ||| || ||| | || || || | || || ||||| | ||| Sbjct 5694606 GAGCGGGGATAGAACGGGGTCTTTTCGTTCTGGGGCGTCTCCGCCACCTTGCCGTACAGC 5694665 Query 268568 TCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCC 268627 ||||| |||||||| |||||||| || || | || | ||||| || Sbjct 5694666 TCGGACGTCGATGCCTGGTAGAAGCGGACCGTCCGCTCCTGCCCCACCGTACGGATGGCA 5694725 Query 268628 TCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAAT 268687 ||||||| || || || || | ||||||| || || || ||||| || ||||| Sbjct 5694726 TCGAGCAGCCGCAGCGTACCGACCGCATCCACCTCGGCCGTGTACTCGCTCAGATCGAAC 5694785 Query 268688 GACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGC 268747 || | || || |||||||||||| |||| || || | || ||| ||||| Sbjct 5694786 GAAATCTTCACGTGGCTCTGGGCGGCCAGATTGTATATTTCGGACGGGCGCACCTGGGCA 5694845 Query 268748 ACGATCTTCACGAGGTTCGTTG-AGTCGGTGAGGTCTCCGTAGTGCA 268793 | ||| ||||| | | || || |||||| | ||| |||||||||| Sbjct 5694846 ATGATTTTCACCA-GCGCGCTGCTGTCGGTCATGTCGCCGTAGTGCA 5694891 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/140 (74%), Gaps = 7/140 (5%) Strand=Plus/Plus Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTC--GTCGGCATT---CATGACGCCCGCCTT 9949 |||| || || || | | |||||||||||| | ||| || ||| |||||| ||| Sbjct 4990682 AGAAATCCGCATCGAGCGTAAACACGTTGTCCAGCCGG--TTGGCCATCACGCCCCACTT 4990739 Query 9950 CTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTC 10009 ||||||||| ||| |||||||||||| | |||||||||||| || |||| ||| Sbjct 4990740 CTGGTACTCGCCAACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTCGAGCGAGATGAACTC 4990799 Query 10010 CATGAAGTCAAAGGGGTTCT 10029 ||||||| || ||||||| Sbjct 4990800 CATGAAGCTGAACGGGTTCT 4990819 >seq82 Length=995134 Score = 152 bits (168), Expect = 9e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||||||||| || || || || | |||| || || |||||||| || ||||||||||| Sbjct 831580 TTAATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATA 831521 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || || || | ||||| || | |||||| |||||||| || || | || || || Sbjct 831520 GTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATC 831461 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||| || |||||||| || ||||| ||||| || ||| || || || | || Sbjct 831460 TGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGG 831401 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 831400 CTCAACCTCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || |||||||| || ||||||||||| || || Sbjct 830889 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 830830 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 830829 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 830770 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||| || || || | || ||| || Sbjct 830769 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGACC 830710 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| ||||| || || || || ||||| |||||||| Sbjct 830709 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830663 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || |||||||| || ||||||||||| || || Sbjct 831345 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 831286 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 831285 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 831226 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||| || || || | || || || Sbjct 831225 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 831166 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 831165 TCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| || || |||||||| || ||||||||||| || || Sbjct 831117 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 831058 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || || || || || Sbjct 831057 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 830998 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || ||| || || || | || || || Sbjct 830997 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 830938 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| ||||| || || || || ||||| |||||||| Sbjct 830937 TCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 >seq38 Length=1813042 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| || || || ||||| || |||||||| || ||||| Sbjct 65546 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 65605 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 65606 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 65665 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 65666 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 65725 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 65726 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 65772 >seq80 Length=1009533 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || || || || |||| |||| || || || || || || || ||||| || Sbjct 729659 TACTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAG 729600 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 |||||||| || | ||||| || | |||||| |||||||| || || | || || || Sbjct 729599 TCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCT 729540 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||||||||||||||| || ||||||||||| || |||||| ||||| | | Sbjct 729539 GGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGC 729480 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 729479 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 729427 >seq31 Length=2272525 Score = 84.2 bits (92), Expect = 4e-11 Identities = 111/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 196592 ACGGAAACATTTGCGATGGGCGTCAACGGGCCTGCGAGGACCGTCGTCTTCGA--GT-CG 196648 ||||| || |||||||||||||| ||| ||| ||| | || ||| |||| || || || Sbjct 810287 ACGGAGACGTTTGCGATGGGCGTTAACATGCCCGCGCGCACGGTCATCTTTGACAGTACG 810346 Query 196649 CTCGAGAAGTTCGATGGACACGAGCGCCGCATGTTCCAGCCGCACGAGTTCATCCAAATG 196708 | | ||||||||||| || | | ||| | | || ||| ||||| || || ||| Sbjct 810347 CGC---AAGTTCGATGGGCAGGCGTTCCGGCCGCTGCAACCGTCCGAGTACACGCAGATG 810403 Query 196709 GCGGGCCGGGCCGGGCGCCGAGGGTTTGACA 196739 ||||||||||||||||| || || | |||| Sbjct 810404 GCGGGCCGGGCCGGGCGGCGCGGTCTCGACA 810434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599048392440