Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq24 302 8e-77 seq3 244 2e-59 >seq24 Length=2561919 Score = 302 bits (334), Expect = 8e-77 Identities = 934/1425 (66%), Gaps = 60/1425 (4%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||| ||||| ||||||| |||||| | | ||| | ||| || ||| Sbjct 1154355 GTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGTACGG 1154296 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||||||| || || || |||||| || |||||||| || | || Sbjct 1154295 CTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGGCCAA 1154236 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 |||||| || | | |||||| | ||| | | |||| ||||| ||| Sbjct 1154235 CAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCCCAGTTCCA 1154176 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || ||| | |||| | || |||||| || ||||||| | |||||||| Sbjct 1154175 CAGATCCGTCGGTTCCTTG---TT------CCACATCTCGTACTGCAGAATGCCCTTGCT 1154125 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || |||||||||||||| ||| ||| || || || || ||||| || ||||||| | Sbjct 1154124 CACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGC 1154065 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC----GGGCCT 244445 || || ||| ||||||||||||| ||||| || ||| | || | || | |||| Sbjct 1154064 TTCCAGCGCGCCGTAGTAGATGGTTTCGAATAT----TTGCTGATTTAGCTTTTGAGCCT 1154009 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | || || ||| | ||||| | ||||||| ||||||||||||| Sbjct 1154008 CTTCGCTTTCGTACGGATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGA 1153949 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | ||||| || ||||| ||| | ||||||||| | || || |||||||| || | ||| Sbjct 1153948 TCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGA 1153889 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 | || || | ||||| || ||||| || | | |||| || |||| || Sbjct 1153888 CATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCTTTGCAA 1153829 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||| ||| | || || | | |||||| ||| | ||||| Sbjct 1153828 AGTCATACGTTTT-------------ATCTTGCT--TTACAAACATGTTCAAGGCGATCG 1153784 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||||| ||||| || || ||||| ||| | ||||| ||||| || ||||| | Sbjct 1153783 AGGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATTTCAGTGCACA 1153724 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGG-CG-TTGCAGGCGTC 244803 ||| || ||||||||||| | | ||| || || |||| || ||||| || || Sbjct 1153723 AGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATC 1153666 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGA 244862 |||||| |||||| | || | ||||| || | ||| | ||| || ||| ||| | Sbjct 1153665 CTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAA-CCACA 1153607 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCG---AGCCTTGCCCTCTGCCTCGTAGCGGGTGTACA 244919 | ||| ||||| ||| || || ||| |||||| |||||| ||||||| Sbjct 1153606 GATCCTGCGCCTTCACCTGCC-GCATAAAGCGA--CCCTCTTTCTCGTACTCCGTGTACA 1153550 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGA 244979 | ||||||||| ||||||| || ||| ||||| || ||||||||| | Sbjct 1153549 GCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGACCGGGACAATCGTGCGGGCACATCA 1153490 Query 244980 GACTCCAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 | |||||| ||| |||| ||| || | || |||||| ||||| || ||||| || Sbjct 1153489 GGCTCCACATTTCGTTCGCC-TCC---ACACGCTTCATGAACAGGTCCGGTATCCACAGT 1153434 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCA 245093 || | || | ||||| || | | | ||| ||| ||||||||| ||| |||| || | Sbjct 1153433 GCGTAAAACATGTCCC--GTGCGCGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGA 1153376 Query 245094 AAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| || || | ||| | ||||||||||| | |||| |||| || || ||||||| Sbjct 1153375 GAAACTCGAATATATCGCCATGCCAGGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCT 1153316 Query 245154 TGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTA 245213 ||||||| ||||| || || || | |||| ||| ||| || | ||||| | Sbjct 1153315 TGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATCGGCACCA 1153256 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 ||||| || ||||| ||||| |||||| | ||||| | | || | | Sbjct 1153255 GACCGTTTGAAATCCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCA 1153196 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || || | || ||||| ||| || || |||||||| ||| | ||||| Sbjct 1153195 CGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGTGTGTCGT 1153136 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG-C 245392 |||||||| ||||| || |||| | | ||| || ||||| || |||||||| | Sbjct 1153135 AGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAACAGGACGAAAGCTGGGGAC 1153076 Query 245393 TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAG 245451 | | || || |||| ||| || |||||||||||| || | |||| || || Sbjct 1153075 GCTGCGTAGC-CGCCGCAAACATAGTTGGCGAGGCGTGGGTAAAATAAC-GCTCGGACAG 1153018 Query 245452 GAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | ||| |||| || | || ||||||| ||||| ||||| Sbjct 1153017 CAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCATGGAT 1152973 >seq3 Length=6534354 Score = 244 bits (270), Expect = 2e-59 Identities = 308/417 (74%), Gaps = 11/417 (3%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || ||| |||| ||| | |||| |||||||||||||||||| ||| Sbjct 4991350 CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGAGGAAGGCGGACTGGGCGCTGAAC 4991291 Query 42669 TGGATCGAGAGTCCCGACG--CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| ||| | || | |||| || |||||| || | || || || | || || | Sbjct 4991290 TGGATCTCGAG-CAAGAAGGCCAACTTT-GGCGAGCGGGTCGTGGCATTCGCTGCGGTTG 4991233 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-- 42784 |||| ||||||||| || ||||||| | ||||||||||| ||| || ||| | Sbjct 4991232 AGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGC--GTGGCCT 4991175 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 |||||| |||||||||||||||||||| || ||| | ||||| |||||||| | || Sbjct 4991174 GATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGA 4991115 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| ||||| | | || ||| ||||| ||||||||||| || Sbjct 4991114 CTTTGCCTGCCTGATGTTC---AAGTATCTGGTGCAGAAGCCGTCGAAGGAGCGCGTGAC 4991058 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || || ||| ||||||| |||||||||| ||| || | ||||| || Sbjct 4991057 GGAGATCATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGT 4990998 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | || ||||||||||| || || |||| ||||||| ||| || ||||| Sbjct 4990997 GGATATGCTCGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGA 4990941 Score = 118 bits (130), Expect = 2e-21 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||| | || ||| |||| ||| ||||||||| | | ||||||| | ||| Sbjct 4991729 CTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACTGGGAGACGCTGAAACC 4991670 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 || |||| ||| || || | ||||||||||| ||||| || ||||| || || Sbjct 4991669 GAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCCGCGTCCGACGGTATCGT 4991610 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGC 42512 || ||||| |||| | |||| | ||||||||| ||| || ||||||||| Sbjct 4991609 GAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACG--GAAGCGCGCTGC 4991552 Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 ||||||||||||||||| || || || || |||||| ||| ||||| | ||| || Sbjct 4991551 TTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTACTCGCTGCTGATC 4991492 Query 42573 AACACGTACATCC 42585 |||||||||||| Sbjct 4991491 GACACGTACATCC 4991479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315272805520