Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq118 100 2e-16 seq38 93.3 3e-14 seq80 87.8 1e-12 >seq118 Length=660226 Score = 100 bits (110), Expect = 2e-16 Identities = 193/279 (69%), Gaps = 7/279 (3%) Strand=Plus/Plus Query 37831 ACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGT 37890 ||||||| ||||||| |||| || | ||| | ||| ||||| |||||||| | Sbjct 48979 ACGATCT---GTGGAACTCGGCCCAGCTGCAGATGGTGAAGGAGGGCAAGATGCACGGCT 49035 Query 37891 ATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTC-AGACCGCG 37949 |||||||||| ||| ||| || || |||| ||| | || | || | || ||| Sbjct 49036 TCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGAC-GAAAACGCCCGAGGAAGCG 49094 Query 37950 CTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGT 38009 || | || || ||||| || ||| ||||| |||| ||||| ||||| ||||| Sbjct 49095 CTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGATGGGCGCGATCCGAACGGG 49154 Query 38010 TACGTCGGCTGTTTGTGGTCTATATGCGGGC-TACACGATAGAGCCTGGCGCGAGATTCC 38068 |||||||| || ||||||| || ||||| | |||||| | |||| ||| Sbjct 49155 TACGTCGGTTGCATGTGGTCGATC-GCGGGTATCCACGATCAGGGCTGGAAGGAGCGCGA 49213 Query 38069 CATTTACGGCAAGATTCGGTACATGAACTACAACGGATG 38107 || | ||||| ||||||||||||||||| ||||||| Sbjct 49214 AATCTTTGGCAAAATTCGGTACATGAACTATGACGGATG 49252 >seq38 Length=1813042 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| ||||||||||||||||| || ||||||||| |||||||| || | Sbjct 65545 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 65604 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 65605 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 65664 Query 34020 CACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 65665 GATTCCCTCCTTGTCC 65680 >seq80 Length=1009533 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || ||||||||||||||||| || ||||||||||||||||| || | | | || || Sbjct 729644 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTG-CG 729586 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| ||||||||||| || ||||| ||||||||||| || | || || Sbjct 729585 ACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTC 729526 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCG 34087 |||||| || ||| ||| | ||| | | || | || ||| || | | Sbjct 729525 CTTGTCCTGGATCTTTGCCTTCA-CATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTG 729467 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || || || ||||| ||||||||||| || || ||||| ||| Sbjct 729466 TGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTTT 729423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397052590945654