Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq201 102 9e-17 seq61 91.5 2e-13 seq53 91.5 2e-13 seq113 89.7 6e-13 seq79 89.7 6e-13 seq98 87.8 2e-12 seq132 86.0 7e-12 seq25 86.0 7e-12 seq11 86.0 7e-12 >seq201 Length=243930 Score = 102 bits (112), Expect = 9e-17 Identities = 92/113 (81%), Gaps = 7/113 (6%) Strand=Plus/Plus Query 56978 ACAACAAATTA-ACGTTTATGAAA----AATTTTCTCCTCGGCAAGAAATCGAACCCTGG 57032 |||||||||| || ||||| ||| |||| ||||| || | | |||||||||| || Sbjct 243578 ACAACAAATTCTACATTTATAAAACAATAATTCTCTCCCCGACGGGGAATCGAACCCCGG 243637 Query 57033 TCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA--TTGAA 57083 ||||||||||||||||||| ||||| |||||||||||| |||||| ||||| Sbjct 243638 TCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTATCGAGGAAGTTGAA 243690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||| || || ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 242201 AAAACTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 242260 Query 57057 CTCACCACTATACTACCGAGGAT 57079 || |||||||||||| ||||||| Sbjct 242261 CTGACCACTATACTATCGAGGAT 242283 >seq61 Length=1286728 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 56998 AAAAAT-TTTCTCCTCGGCAA---GAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 |||||| ||||||||| | | | |||||||||| ||||||||||||||||||||| Sbjct 1040904 AAAAATATTTCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1040963 Query 57054 ATACTCACCACTATACTACCGAGGAT 57079 ||||| |||||||||||| ||||||| Sbjct 1040964 ATACTGACCACTATACTATCGAGGAT 1040989 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 1041206 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 1041147 Query 57063 ACTATACTACCGAGGAT 57079 ||||||||| ||||||| Sbjct 1041146 ACTATACTATCGAGGAT 1041130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1040465 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1040524 Query 57067 TACTACCGAGGA-TTGAA 57083 ||||| |||||| ||||| Sbjct 1040525 TACTATCGAGGACTTGAA 1040542 >seq53 Length=1489982 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 56999 AAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| ||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 212753 AAAATTTCCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 212812 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 212813 CTGACCACTATACTATCGAGGA 212834 >seq113 Length=692719 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 319883 AAAAACTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 319942 Query 57059 CACCACTATACTACCGAGGA--TTGAAT 57084 |||||||||||| |||||| |||||| Sbjct 319943 GACCACTATACTATCGAGGATCTTGAAT 319970 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 320939 ATTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 320998 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 320999 CACTATACTATCGAGGA 321015 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 321159 ATTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 321218 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 321219 CACTATACTATCGAGGA 321235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 57002 ATTTTC--TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||||| ||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 323195 ATTTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 323254 Query 57060 ACCACTATACTACCGAGG-ATTGA 57082 |||||||||||| ||||| ||||| Sbjct 323255 ACCACTATACTATCGAGGAATTGA 323278 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 318971 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 319030 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 319031 CTATACTATCGAGGA 319045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| | ||| Sbjct 322302 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAATCAC 322361 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 322362 TATACTATCGAGGA 322375 >seq79 Length=1011660 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 852986 ATTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAC 853045 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 853046 CACTATACTATCGAGGA 853062 >seq98 Length=787731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 305615 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 305556 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 305555 ACTATACTATCGAGGA 305540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 489957 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 490016 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 490017 ATACTATCGAGGA 490029 >seq132 Length=574995 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 572418 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 572359 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 572358 CTATACTATCGAGGA 572344 >seq25 Length=2547437 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 413168 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 413109 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 413108 TACTATCGAGGA 413097 >seq11 Length=3202625 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 708404 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 708463 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 708464 TACTATCGAGGA 708475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199036345680