Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq80 132 5e-26 seq24 123 2e-23 seq38 111 2e-19 >seq80 Length=1009533 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| ||||||| |||||||| || ||||||||||| || | Sbjct 729654 ACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGA 729595 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 729594 GAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 729535 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || ||| ||| ||| ||| | || || | || || Sbjct 729534 AATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGAC 729475 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||| | ||||| |||||||| ||||| || Sbjct 729474 CTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATGTT 729424 >seq24 Length=2561919 Score = 123 bits (136), Expect = 2e-23 Identities = 286/431 (66%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| |||||||||||||||| |||||||| | ||||| || || | || || ||||| Sbjct 1154303 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATT 1154244 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || || || || || | |||||| ||||| || || || || ||| Sbjct 1154243 GGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCC 1154184 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||||| | || |||| | ||||||||| ||||| |||| || ||| ||| Sbjct 1154183 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTC 1154124 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||| ||| | || | |||||| || | | ||||| || || || ||| Sbjct 1154123 ACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGCT 1154064 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || | ||| | ||||| | ||||||| ||||| | |||| | ||| || | || Sbjct 1154063 TCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCG 1154004 Query 154371 CTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCA 154430 ||||||||||| | | || || || |||||||| | || || | ||| | || Sbjct 1154003 CTTTCGTACGGATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCG 1153944 Query 154431 ACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCG 154490 | || ||||| | ||| || || || || || ||||| ||||||| ||| Sbjct 1153943 ATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCA 1153884 Query 154491 ATAATTTTATT 154501 || ||||| || Sbjct 1153883 ATGATTTTGTT 1153873 Score = 120 bits (132), Expect = 3e-22 Identities = 530/824 (64%), Gaps = 25/824 (3%) Strand=Plus/Minus Query 154625 GTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATT 154684 ||| | ||||||||| | |||||| || ||| |||||||| | || | ||| || Sbjct 1153746 GTACTCCACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT 1153687 Query 154685 CGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGT 154744 ||| ||||| || || ||||||| |||||||| ||| |||||||| || | Sbjct 1153686 ACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGA 1153627 Query 154745 TTCAATAATTGTGCGAAACAGACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCG 154802 ||| || || | | || || | || |||||| || || | |||| ||| || Sbjct 1153626 TTCGATGATCG--CAAACCACAGATCCTGCGCCTTCACCTGCCGCATAAAGCGACCCTCT 1153569 Query 154803 CTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGA 154862 |||| || | |||||| || || |||||| | | |||||| | ||||||| Sbjct 1153568 TTCTCGTACTCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGACCGGGA 1153509 Query 154863 CAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAA 154922 || || || ||||||| |||||||||||| | || || ||||| |||| Sbjct 1153508 CAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCACACGCTTCATGAACAGG 1153449 Query 154923 TCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTT 154982 ||||| | ||||| ||||| |||| || || || || || ||| ||||| Sbjct 1153448 TCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCAGTGTTT 1153389 Query 154983 CGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATC 155042 ||| | || | ||| || |||| ||| | ||||| ||||| | ||| | ||| | Sbjct 1153388 TTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCAGGGCTCGAGATAGATGGCGAAT 1153329 Query 155043 GCGCCTTTGCG---TTTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGC 155099 || || || || || || ||||| |||| || | ||| ||||| ||||| Sbjct 1153328 GCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGT 1153269 Query 155100 AACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC----ACGTATCGCGCTGCCGCG 155155 | || || ||| ||| | | | ||||| ||||| | ||| || | || Sbjct 1153268 AGCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGAGATGTA-CG---TTCCCTT 1153213 Query 155156 AGCACGCGCTTTA-TGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCAC 155214 || || | | | || || || | || | || ||| | | || || ||| | || | Sbjct 1153212 CGCGCG-GATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCGC 1153154 Query 155215 AGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAAC 155274 | | | || || ||||| || || | ||||| ||||| || ||||||| ||||| Sbjct 1153153 ACTGCTTCAGTGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAAC 1153094 Query 155275 ACGAAGATAATTGAGGTTG-AGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTA 155333 | || || | || || | | | |||| |||||||| | || || ||||| ||| Sbjct 1153093 AGGACGAAAGCTGGGGACGCTGCGTAGCC-GCCGCAAACATAGTTGGCGAGGCGTGGGTA 1153035 Query 155334 AACATTTTGTTGGCGGTTA--AG-TTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCG 155390 || || | | ||| | || ||||| || ||||| || || || ||||| || Sbjct 1153034 AA-ATAACGCT--CGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGATGTCCTCGCCA 1152978 Query 155391 TGTATACCGATCGCCACGCGCATCAGCATGTGTTGAATGCGCTC 155434 || || || || || ||||||||||||||||| || |||||| Sbjct 1152977 TGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTC 1152934 >seq38 Length=1813042 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| ||||||| ||||| || || || |||||||| || | Sbjct 65545 ACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 65604 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 65605 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 65664 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| ||| | ||||| || || || Sbjct 65665 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 65724 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| ||||| || ||||| || Sbjct 65725 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 65775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632140249880