Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq24 423 2e-113 seq3 116 4e-21 seq80 87.8 2e-12 >seq24 Length=2561919 Score = 423 bits (468), Expect = 2e-113 Identities = 1001/1501 (67%), Gaps = 22/1501 (1%) Strand=Plus/Minus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| ||||| || |||||||||| |||||| || || || || || ||| | Sbjct 1154357 TGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGTAC 1154298 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || || ||||| || ||||| || ||||| ||||||| || |||||||| ||| Sbjct 1154297 GGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGGCC 1154238 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | || || ||||| || | |||||| | || | ||||||||| | ||| | | Sbjct 1154237 AACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCCCAGTTC 1154178 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 ||||| ||| |||| | ||||||||| |||||||| | | || || | || Sbjct 1154177 CACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGG 1154118 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 ||||| | |||| ||| ||| || || ||||| || ||||| || || ||| Sbjct 1154117 CTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGC 1154058 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 ||||| ||||| ||||||||| ||||| | ||| || || |||||||| ||| Sbjct 1154057 GCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCG 1153998 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 ||||| ||||| || | || || ||||||| ||||| | |||| ||||| || Sbjct 1153997 TACGGATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGGC 1153938 Query 153447 CGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATT 153506 | || | ||| |||| | || || | |||||||| |||| ||| || ||| Sbjct 1153937 CTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATT 1153878 Query 153507 TTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTC 153566 ||||| || |||||| || |||| | |||| || || | || ||||| || Sbjct 1153877 TTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGTT 1153818 Query 153567 ATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGT 153625 | || | || | || | |||| ||| || || |||||||| || || || Sbjct 1153817 TTATCTT----GCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTAC 1153762 Query 153626 CTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGC 153684 ||| || || || ||||| ||| || || | ||| | |||| ||||| ||| || Sbjct 1153761 CTCATCCTTCGACGA-GTACTCCACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGC 1153703 Query 153685 CCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 153744 | | ||| ||||| || ||||| |||||||| || || ||| | |||||||||||| ||| Sbjct 1153702 CGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGC 1153643 Query 153745 CGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCT 153801 |||| || || |||| ||||| ||| ||||| ||| |||||||| |||| || Sbjct 1153642 CGGTTTCCACCTGCGATTCGATGATCGCAAACC---ACAGATCCTGCGCCTTCACCTGCC 1153586 Query 153802 GCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGC 153861 || | |||| ||||| ||||||| | |||||| ||| ||||| ||||| || Sbjct 1153585 GCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGG 1153526 Query 153862 AGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGA 153921 ||| | || |||||||| | ||||| |||||||| |||||| |||| || | | Sbjct 1153525 TGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCA 1153466 Query 153922 CGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAAT 153981 | || ||||||||| ||||| | ||| || ||||| | | ||| || || | | Sbjct 1153465 CACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCT 1153406 Query 153982 CCTCCGCGCCCATGTTGCGTTTCAGATTGAG-CACGCTATAGATGTCGGCGTGCCAGGGT 154040 ||||| ||| |||| ||||||| ||| || | | | || ||| | |||||||| Sbjct 1153405 CCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGA-ATATATCGCCATGCCAGGGC 1153347 Query 154041 TCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACC 154097 || | |||| ||| | || || ||| || || ||||||||||||| || || Sbjct 1153346 TCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCC 1153287 Query 154098 ATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGT--CGAAT 154155 |||||||| ||||||| | ||| || |||| ||| ||| | ||||| || || | Sbjct 1153286 GTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGA- 1153228 Query 154156 TGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACT 154215 ||| | | || ||||| | |||||||| | || ||||| ||| | ||| Sbjct 1153227 -GATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACT 1153169 Query 154216 TTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGA 154275 |||| || ||||| | ||| || ||||||||| || |||||||| ||| | Sbjct 1153168 TTGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAATGCTATCTTCGGACA 1153109 Query 154276 CGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGG 154335 | | || |||||| || | | || ||| |||| |||||| ||| | || | Sbjct 1153108 TGGTCAACAGGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCGCCGCAAACATAGTTG 1153049 Query 154336 GACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGA 154395 | ||||| ||||| | | || || ||| || ||||| || | |||| Sbjct 1153048 GCGAGGCGTGGGTAAAATAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATCGA 1152989 Query 154396 TATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGA 154455 | || ||||| || ||||| | || |||||||| ||||||||||| || || ||| ||| Sbjct 1152988 TGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGACGA 1152929 Query 154456 CTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAATACTTGT 154515 | | | ||||||| | ||| ||| | |||||| | |||||||| || | Sbjct 1152928 TTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTTAT 1152869 Query 154516 A 154516 | Sbjct 1152868 A 1152868 >seq3 Length=6534354 Score = 116 bits (128), Expect = 4e-21 Identities = 292/436 (67%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 52305 CTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAA 52363 ||| | ||||| |||| ||| |||||||||| | ||||| | ||||| |||| Sbjct 4991350 CTGTTCAATGCCATCGAA-ACGCTGCCGTGCGTGAAGAGGAAGGCGGACTGGGCGCTGAA 4991292 Query 52364 GTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGA 52423 |||||| |||| | | |||| | | |||||| | ||||| ||||| || || Sbjct 4991291 CTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGA 4991232 Query 52424 GGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAAT 52483 ||| | || || ||| ||||| ||||| ||||| | | || | | ||| | || Sbjct 4991231 GGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGCGTGGCCTGAT 4991172 Query 52484 GCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTT 52543 ||| || || || ||| |||||| |||| |||||||||||||| |||||| ||||| Sbjct 4991171 GCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTT 4991112 Query 52544 TGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGA 52602 ||| ||||| | |||| | ||| | ||| | || ||| | || | || Sbjct 4991111 TGCCTGCCTGATGTTCAAGTATCTGGTG-CAGAAGCCGTCGA--AGGAGCGCGTGACGGA 4991055 Query 52603 GCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCG 52662 | || || || |||||| ||||| ||||||| | ||| || |||||||| | Sbjct 4991054 G-ATCATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCTGACGAAGGCACTGCCGGTGG 4990996 Query 52663 AGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTC 52722 | |||| ||||||||| | |||| ||||||| ||||||||||| ||||| Sbjct 4990995 ATATGCTCGGCATGAACTGTGATCTGATGTCGCAGTACATTGAGTTTGTGGCCGATCGCT 4990936 Query 52723 TGTTGGTGCAGCTCGG 52738 || || | |||| || Sbjct 4990935 TGCTGCTCGAGCTGGG 4990920 >seq80 Length=1009533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || | ||| | | | || ||||| ||||||||||||||| | ||| || Sbjct 729641 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 729582 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| || || || |||| |||| |||||||| || || || || || ||||| ||| Sbjct 729581 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTG 729522 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| ||| || | | || | ||||| | | ||| ||||| | || | Sbjct 729521 TCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 729462 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || || || || ||||| || |||||||||||| Sbjct 729461 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 729426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249825951440