Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq24 212 6e-50 seq80 136 4e-27 seq38 127 2e-24 seq82 113 4e-20 >seq24 Length=2561919 Score = 212 bits (234), Expect = 6e-50 Identities = 1156/1811 (64%), Gaps = 73/1811 (4%) Strand=Plus/Minus Query 145708 GCCGCTTCGGC--GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGAT 145765 || |||||| | ||| || || ||||| |||| | ||||||| || || ||||||| Sbjct 1154713 GCAGCTTCGTCTTGTCCACCGTAAACTGGATCGCATTCACGGCCGGCTTGGTACGCAGAT 1154654 Query 145766 AGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA---TGA 145822 |||||||||| || || | | ||| ||| ||| || || || || || || Sbjct 1154653 AGTACATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGC 1154594 Query 145823 CCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAG 145882 | ||| | || || ||||| | || | ||||| |||||| || || | | Sbjct 1154593 CATAGT---TTGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCAC 1154537 Query 145883 CCCGGTCGGCGGCCATGTCTATCATGCAC--TTTGATTTA-ATTTCCCATGCGGTTTTAA 145939 | || || |||||||| | | |||||| ||| | | || |||||| | ||||| Sbjct 1154536 CACGATCTGCGGCCATTT---TGATGCACGTTTTAACCGAGATCTCCCATACCGTTTTGT 1154480 Query 145940 AGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCA 145999 | || || | | ||| ||||| | |||| || || | || ||||| | || || Sbjct 1154479 ACAGGTCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACA 1154420 Query 146000 ATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGAT 146059 |||| ||| || || || | | || || | ||| | |||| Sbjct 1154419 GAATTTCGTTCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGAT 1154360 Query 146060 ACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGA 146119 ||||| |||||||| |||||||| | | |||||||| || ||||| ||| Sbjct 1154359 GATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGT 1154300 Query 146120 ACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACG 146179 ||||||||||||| || ||||| ||||| || || ||||| | ||| || ||||| | Sbjct 1154299 ACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGG 1154240 Query 146180 CCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTCCCGTAGTTTGGACCAA 146238 ||| ||||| || || | | ||||| ||||| ||||||||| | | || ||| Sbjct 1154239 CCAACAGCAGCGAATTGCGAATACCGTG-CTTTGCGATCTTTTCCTTCAACTCGGCCCAG 1154181 Query 146239 TTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAAC 146298 ||||||| ||||||| || | | || | | ||||| |||| | |||| | | Sbjct 1154180 TTCCACA---GATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTC 1154124 Query 146299 AGGGGGCTATTCTCGTACGATTCATAAGGACC--GTCGATCTTGGCCAGTTCGCAGCTAG 146356 | ||||| |||||||| || || || || |||| | ||||| || ||||| | Sbjct 1154123 ACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGC--GGCCAACTCACAGCTCG 1154066 Query 146357 CTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA---CGCTCCTG-GCC 146412 ||||||| || |||| ||||| | ||| || | | ||| ||| || ||| Sbjct 1154065 CTTCCAGCGCGCCGTAGTAGATGGTTT---CGAATAT-TTGCTGATTTAGCTTTTGAGCC 1154010 Query 146413 TCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCC 146471 || ||||| ||||| ||||| || | || | || || ||||| | ||||| | || Sbjct 1154009 TCTTCGCTTTCGTA-CGGATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCC 1153951 Query 146472 GACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTT 146531 || || | || | ||| | | || | | ||| ||| |||||||| || Sbjct 1153950 GATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATT 1153891 Query 146532 GCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGAC 146591 | || ||||| ||||| ||||| ||| || | || | | |||||| | Sbjct 1153890 GACATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCTTTGC 1153831 Query 146592 ATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651 | ||||| | |||||| || || || || |||| | |||||| ||||||| || Sbjct 1153830 AAAGTCATACGTTTTATCTT---GCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATT 1153774 Query 146652 ACATACGGCAGTCTCGTCCTT-GTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGC 146710 ||||| || ||| ||||| | || | |||| |||||| || | ||| | |||| | Sbjct 1153773 GCATACCGCTACCTCATCCTTCGACG-AGTACTCCACAATTTCAGTGCACAAGTTGGAAC 1153715 Query 146711 ACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCA 146770 | |||||| |||| | ||| | |||||||| ||||| | |||||||| |||| Sbjct 1153714 ATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCA 1153655 Query 146771 TGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGAT--GAATCTAAACAAATCTCTG-G 146827 |||||||| | |||||||| || | | |||| ||| || | ||| ||| ||| | Sbjct 1153654 TGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAAC--CACAGATC-CTGCG 1153598 Query 146828 CCTTTACTTGTCTTTCGTACAG-TTTATTCTTT-TCGTATTTCTCGTACAATATTTCAAA 146885 |||| || || | | || || ||||| ||||| | | ||||| | || || Sbjct 1153597 CCTTCACCTGCC--GCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAA 1153540 Query 146886 ACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTC 146945 || | ||| || |||||| | | | || || | ||| ||| Sbjct 1153539 CTCTTCGCCCCAGGTGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACAT 1153480 Query 146946 TTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTC 147005 || ||| ||| ||| || | ||| |||| || || ||||| || | | || ||| Sbjct 1153479 TTCGTTCGCCTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTC 1153420 Query 147006 GCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTC 147065 || || | | ||||| ||| |||| ||| | ||| | ||| | || || Sbjct 1153419 CCGTGCGCGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGAATATATC 1153360 Query 147066 CGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC---TTACCGCCCTGATC 147122 |||||| ||||| | || ||||| ||| || ||| || || |||||||| Sbjct 1153359 GCCATGCCAGGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATC 1153300 Query 147123 GACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGA------ 147176 ||||| || || | || ||| |||| |||| ||| | ||| || ||| || Sbjct 1153299 GACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCCC 1153240 Query 147177 TTTTGTGGTGCCGTTGTA------TTGAGCGCTGACGCTTTGCACGCTCAGCCCGAGACC 147230 || ||| | | |||| | |||| || | |||||| |||| |||| || Sbjct 1153239 GTTCGTGCCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCC 1153180 Query 147231 TCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCT 147290 ||| || || ||||| | ||| ||| | || || | ||||||||| || ||||| Sbjct 1153179 ACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAATGCT 1153120 Query 147291 GTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGC 147350 ||||| ||| ||||||||| || | | |||||||| ||| ||||||| Sbjct 1153119 ATCTTCGGACATGGTCAACAGGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCGCCGC 1153060 Query 147351 AAACAGCGTGGGGCTGGCGTGCGTGAA--CGTGCCCAGACTCATCA-ATTGATACGTTTC 147407 ||||| || || |||||| || || || | || || || |||| || || || Sbjct 1153059 AAACATAGTTGGCGAGGCGTGGGTAAAATAACGCTCGGA--CAGCAGATTG-TAGGTCTC 1153003 Query 147408 AATGGCGCT-CAT-AACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGC 147465 || |||| ||| | ||| ||||| || ||| | | || |||||||| ||||||||| Sbjct 1153002 GAT--CGCTGCATCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGC 1152945 Query 147466 TGGGGTCGTTC 147476 ||||| || || Sbjct 1152944 TGGGGGCGCTC 1152934 >seq80 Length=1009533 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| ||||| ||| | || || || || ||||| ||||| ||| Sbjct 729653 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 729594 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||||||||| || || Sbjct 729593 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 729534 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | |||| ||||||| | |||||| Sbjct 729533 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 729474 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || |||||||| || ||||| || |||||||||||| Sbjct 729473 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 729426 >seq38 Length=1813042 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||||||| | |||| ||||| ||| | || ||||| || || || ||||| ||| Sbjct 65543 GCACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 65602 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||||| ||| || ||||| || || ||| |||||| ||||||||||| || Sbjct 65603 GACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGC 65662 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| ||| ||| | | |||| || |||| |||| Sbjct 65663 GGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 65722 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 65723 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 65772 >seq82 Length=995134 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || || || || || || | Sbjct 830889 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 830830 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||||| ||||||||||| || || Sbjct 830829 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 830770 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || |||| ||||| Sbjct 830769 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGACC 830710 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || |||||||||||||| || ||||||||||| Sbjct 830709 TCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830663 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || || || || || || | Sbjct 831117 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 831058 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||||| ||||||||||| || || Sbjct 831057 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 830998 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || |||| ||| || Sbjct 830997 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 830938 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||||||||| || ||||||||||| Sbjct 830937 TCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||| ||| | || ||||| || || || || || || | Sbjct 831345 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 831286 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| |||||| ||||||||||| || || Sbjct 831285 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 831226 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| ||| ||| | | || | || |||| ||| || Sbjct 831225 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 831166 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || |||||||||||||| || ||||||||||| Sbjct 831165 TCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| ||| | || ||||| || || || || || || Sbjct 831574 TCCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGA 831515 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || ||||| ||||| ||| |||||| ||||||||||| || || Sbjct 831514 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 831455 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||| | | || | || |||| ||| || Sbjct 831454 AATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAAC 831395 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| |||||||| || ||||||||||| Sbjct 831394 CTCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475488751998480