Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq24 268 8e-67 seq80 104 2e-17 >seq24 Length=2561919 Score = 268 bits (296), Expect = 8e-67 Identities = 983/1522 (65%), Gaps = 62/1522 (4%) Strand=Plus/Plus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 || || ||||| || | ||||| || ||| ||| ||| || ||| ||| ||| Sbjct 1152868 TATAACTATTTCGGCTTTAAAACCTTGGAACGATCATACTTGCTGAAGATCAAGGGAAAA 1152927 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||| ||| || || || ||||| |||||||| ||||| ||| | || || ||| Sbjct 1152928 ATCGTCGAGCGCCCCCAGCACATGCTGATGCGCGTTGCTATTGGCATCCATGGCGAGGAC 1152987 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 ||||| |||| ||| || ||| || || |||| | | ||| || ||||| Sbjct 1152988 ATCGATGCAGCGATCGAGACCTACAATCTGCTGTCCGAGCGTTATTTTACCCACGCCTCG 1153047 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || ||| |||| || || | ||| || || ||| | || || ||||| || | ||| Sbjct 1153048 CCAACTATGTTTGCGGCGGCTACGCAGCGTCCCCAGCTTTCGTCCTGTTTCCTGTTGACC 1153107 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || |||||| ||||| || ||||| || || || | ||||| | ||||| Sbjct 1153108 ATGTCCGAAGATAGCATTGAGGGCATCTACGACACACTGAAGCAGTGCGCCCTAATTTCA 1153167 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCG-GAAGC---CG 123196 || | | ||| ||||| || ||||||||||| ||| ||||| |||| || Sbjct 1153168 AAGTCGGCCGGTGGCATCGGACTGAACGTGCACT--GTAT----CCGCGCGAAGGGAACG 1153221 Query 123197 --CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 |||| |||| |||| || | ||| || | | ||||| || || ||||| Sbjct 1153222 TACATCTCCGGCACGAACGGGATTTCAAACGGTCTGGTGCCGATGCTACGCGTCTACAAC 1153281 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTAT 123311 || | | ||| ||||||| ||||| ||||| || || || | || |||||| Sbjct 1153282 AATACGGCACGGTACGTCGATCAGGGTGGCAACAAGCGGCCTGGAGCATTCGCCATCTAT 1153341 Query 123312 CTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCG 123371 || || || ||||| | ||| | | ||| ||| | || | || |||| || | Sbjct 1153342 CTCGAGCCCTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGAAAAACACTGGCAAG 1153401 Query 123372 GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGA 123431 || || || || || |||| ||||| | ||| |||| || |||| ||| Sbjct 1153402 GAGGAGGTCCGCGCACGGGACATGTTTTACGCACTGTGGATACCGGACCTGTTCATGAAG 1153461 Query 123432 CGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGT-GTCCCGGCTTGAG 123490 || || | | ||| ||||| || ||||| |||| || | ||||||| | Sbjct 1153462 CGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTG-CCCGCACGATTGTCCCGGTCTATC 1153520 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA 123550 ||| | ||| | |||| || || ||||| || | |||||| || || | Sbjct 1153521 GGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGAGTACGAGAAAGAGGGT---CG 1153577 Query 123551 GGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTT---ATTATCGAAACACAAGT 123604 ||| | ||||| ||| | ||| ||| ||| || |||||| | || || Sbjct 1153578 CTTTATGCGGCAGGTGAAGGCGCAGGATCTGTGG---TTTGCGATCATCGAATCGCAGGT 1153634 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 |||||||| ||||||||||| ||||| || || ||||| | |||| || ||| Sbjct 1153635 GGAAACCGGCGTACCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTAACCAGCA 1153694 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGAT 123722 || | || || || |||||| || | ||| | |||||| | || ||| ||| Sbjct 1153695 GAATATCGGCACCATCAAATGTTCCAACTTGTGCACTGAAATTGTGGAGTACTCGTCGAA 1153754 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA--TCGTTGCGTCG--- 123777 | ||| | || || || || ||| |||| ||||| | |||| | ||| | Sbjct 1153755 G--GATGAGGTAGCGGTATGCAATCTGGCCTCGATCGCCTTGAACATGTTTGTAAAGCAA 1153812 Query 123778 ---AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG- 123833 |||||| | | | ||| |||| ||| || | | || || ||||| | Sbjct 1153813 GATAAAACG----TATGACTTTGCAAA-GCTGAAGGAAGTCGCTAAGAC---AGTAACGC 1153864 Query 123834 --AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGG--AAGCGCGTTT 123886 ||| |||||||||| || ||||| |||| ||||| || |||| |||||| Sbjct 1153865 GCAATCTGAACAAAATCATTGATGTCAATTACTATCCCGTGCCGGAGGCTAAGCGC---- 1153920 Query 123887 GTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGT 123946 || ||| || ||||| ||| |||| | ||| | || || ||||||| ||||| | Sbjct 1153921 -TCCAATATGCGCCACAGGCCGATCGGGATCGGCGTGCAGGGCATGGCCGATGCGTTCAT 1153979 Query 123947 AATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGA 124006 | ||||| |||||||||||||| || || | ||| ||| ||||||| ||| Sbjct 1153980 CCTAATGCGCTATCCGTACGAAAGCGAAGAGGCTCAAAAGCTAAATCAGCAAATATTCGA 1154039 Query 124007 AACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTA 124066 ||| || || |||||||| |||| |||||||| || | || | ||| |||| Sbjct 1154040 AACCATCTACTACGGCGCGCTGGAAGCGAGCTGTGAGTTGGCCGCTCGAGATGGCCCGTA 1154099 Query 124067 CGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGC 124126 ||| | |||| ||||||||||| |||| || ||| |||||||||| |||||||| Sbjct 1154100 CGAGACGTACGAGGGCAGCCCGGTGAGCAAGGGCATTCTGCAGTACGAGATGTGGAACAA 1154159 Query 124127 TACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTT 124186 |||||| || ||||| ||||| || || || || || | | ||||||| | Sbjct 1154160 GGAACCGACGGATCTGTGGAACTGGGCCGAGTTGAAGGAAAAGATCGCAAAGCACGGTAT 1154219 Query 124187 GCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAA 124246 || || |||||| || |||| ||||||||||| |||| || |||||| | || || Sbjct 1154220 TCGCAATTCGCTGCTGTTGGCCCCAATGCCGACGGCTTCCACGGCACAAATTCTCGGCAA 1154279 Query 124247 CAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGA 124306 ||| ||||| |||||||||| ||| || | ||| | || ||||| | ||||| Sbjct 1154280 CAATGAATCGTTCGAGCCGTACACGTCGAACGTTTACAATAGGCGCGTGTTGTCGGGCGA 1154339 Query 124307 TTTTCAAGTGATAAATCATCAT 124328 || || ||| | || |||||| Sbjct 1154340 GTTCCAGGTGGTGAACCATCAT 1154361 >seq80 Length=1009533 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| ||||| || || |||||||| || || || || ||| | Sbjct 729653 CCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAG 729594 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| |||| || || || ||| | |||| || ||||| || || ||| Sbjct 729593 AGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 729534 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 |||||||| || || || || ||| || | || | ||||| |||| |||||| Sbjct 729533 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACC 729474 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| || ||||| || ||||| ||||| Sbjct 729473 TCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 729427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451991747368920