Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq24 197 2e-45 seq3 167 4e-36 >seq24 Length=2561919 Score = 197 bits (218), Expect = 2e-45 Identities = 410/608 (67%), Gaps = 2/608 (0%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||||||||||||||||| ||||| || || |||||||| ||| || | | ||||||||| Sbjct 1154709 CTTCGTCTTGTCCACCGTAAACTGGATCGCATTCACGGCCGGCTTGGTACGCAGATAGTA 1154650 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 |||||| || || | ||| ||| ||| ||||| | || || || | ||| |||| Sbjct 1154649 CATGCCAGTTTTCAACCCCATCTTCCAGCCGTAGAAATGGATCGACGTCAGCTTGCCATA 1154590 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 ||| || || || | ||||||||| | || || || ||||| ||| || || |||| Sbjct 1154589 GTTTGGCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGAT-AAACGCACCACGAT 1154531 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 |||||||||| ||||| || || ||| |||||||| ||||| ||| ||| ||| | Sbjct 1154530 CTGCGGCCATTTTGATGCACGTTTTAACCGAGATCTCCCATACCGTTTTGTACAGGTCGC 1154471 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCA 204131 | | || || | | | | | | |||||| || |||| || || | | Sbjct 1154470 GAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCCATTGTTGGACAGAATTTCGT 1154411 Query 204132 TCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 || || | || |||||| |||| || ||| ||| ||| || || |||| | Sbjct 1154410 TCTTCATGTCGAGATCCCACAGACCCATGTTGGTCAAATCCTGCAGAAGATGATGGTTCA 1154351 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || |||| ||| | | || | | ||| ||| | || |||| Sbjct 1154350 CCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGA 1154291 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 ||| || |||||||||| ||| || || ||| ||||| ||||| || |||| |||| Sbjct 1154290 ACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGGCCAACAGCA 1154231 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCG 204371 | || ||||| | ||||| ||| || | | ||||| || ||||| || Sbjct 1154230 GCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGAT 1154171 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | | |||| | | |||||| ||| |||| | ||||| | || || |||||||||| Sbjct 1154170 CCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGGCTGCCCT 1154111 Query 204432 TGTACGTC 204439 ||||||| Sbjct 1154110 CGTACGTC 1154103 Score = 118 bits (130), Expect = 2e-21 Identities = 345/524 (66%), Gaps = 8/524 (2%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| || || ||||||||||| || || | || | || |||||||||| Sbjct 1153743 CTCCACAATTTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACT 1153684 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 || || || || | |||||||||| |||| |||| | ||| | |||| ||| ||| Sbjct 1153683 TTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTC 1153624 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATC--CCTTGAGAC 205060 | || ||||| || | |||| ||| ||| || || | | || | | Sbjct 1153623 GATGATCGCAAACCACAGATCCTGCGCCTTCACCTGCCGCA--TAAAGCGACCCTCTTTC 1153566 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACAT 205120 ||||| | ||||||||| | | || || || | |||| || || ||||| Sbjct 1153565 TCGTACTCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGGTGTCCGATAGACCGGGACAA 1153506 Query 205121 TTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTC 205179 | | || |||||||| |||||| | | ||| || ||| | || ||| |||||||| Sbjct 1153505 TCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTC-CACACGCTTCATGAACAGGTC 1153447 Query 205180 GCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTT 205239 |||||||| ||||||||| || || || | | | || | ||| ||| || Sbjct 1153446 CGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCAGTGTTTTT 1153387 Query 205240 TTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 |||| || || || || | || ||| | ||||| ||||| | | | ||| | || Sbjct 1153386 CTTCAGATCGAGA-AACTCGAATATATCGCCATGCCAGGGCTCGAGATAGATGGCGAATG 1153328 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || |||| |||||| |||||||| || || || | | | |||| | || || | Sbjct 1153327 CTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGTA 1153268 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 ||||||||||||||||||| | |||||||||||| | |||| Sbjct 1153267 GCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGAGATG 1153224 >seq3 Length=6534354 Score = 167 bits (184), Expect = 4e-36 Identities = 243/340 (71%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || |||||||| || ||||| || | ||||| | |||||||| || || | Sbjct 4990931 CAGCAAGCGATCGGCCACAAACTCAATGTA-CTGCGACATCAGATCACAGTTCATGCCGA 4990989 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || || | || ||| ||||||| ||| ||| ||||| ||| | Sbjct 4990990 GCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGCACCGCATCGCGGA 4991049 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| || || || || | | |||||| || | | | ||| |||| |||| Sbjct 4991050 TGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCA---GATACTTGAACATCAGGC 4991106 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||||||||||||||| || ||||| || ||||| | |||||| || | | |||| | Sbjct 4991107 AGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTC 4991166 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | |||||| || ||||| || || || || || |||||| || |||| Sbjct 4991167 CCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGA 4991226 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | ||||| || || || || ||||||| || ||| ||||| Sbjct 4991227 TACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAA 4991266 Score = 122 bits (134), Expect = 1e-22 Identities = 173/240 (72%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 |||||| ||||||||| || |||||||||||| || || ||||| ||| |||||| Sbjct 4991493 ATCAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAG 4991552 Query 160265 TATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACC 160324 | ||| ||| | |||||||||||| |||| | || ||||||| | || || Sbjct 4991553 CAGCGCGCTTCCGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACG 4991612 Query 160325 AACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTG 160384 | ||||||| || |||||||| |||| |||||| |||||||| || | ||| || | Sbjct 4991613 ATACCGTCGGACGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGTTCG-CTCGG 4991671 Query 160385 TTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || || | | ||||||| ||| ||| | || || ||||||||||||| | |||| Sbjct 4991672 TT---TCAGCGTCTCCCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTCCACCGTCCA 4991728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795135052755120