Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 241 1e-58 seq80 143 3e-29 seq38 136 4e-27 seq82 102 8e-17 >seq3 Length=6534354 Score = 241 bits (266), Expect = 1e-58 Identities = 310/428 (72%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| |||| |||| | |||||||| ||||| ||||| |||||||| || || || Sbjct 4990922 CAGCTCGAGCAGCAAGCGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTT 4990981 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || |||| | ||||||||| || | || || || |||||||| ||||| Sbjct 4990982 CATGCCGAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGCACCGC 4991041 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 ||| || ||| ||| | |||||| || |||| ||||||| || ||||||||| Sbjct 4991042 ATCGCGGATGATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACAT 4991101 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 || ||| ||||||||||| |||| || ||||| | || || || ||||| ||| || Sbjct 4991102 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 4991161 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAA 133010 | || ||||| ||||| || || || ||||| || || |||||||| || || || Sbjct 4991162 GAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAA 4991221 Query 133011 GAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCT 133070 ||||| ||||| || || ||||| ||||| | |||||||| || |||| | ||||| Sbjct 4991222 GAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 4991281 Query 133071 GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGC 133130 | ||||||| ||||||||| || ||||| || |||||||||| |||||||||||| Sbjct 4991282 CGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCGTTTCGATGGC 4991341 Query 133131 GTTCAACA 133138 || |||| Sbjct 4991342 ATTGAACA 4991349 Score = 176 bits (194), Expect = 5e-39 Identities = 209/281 (74%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 133148 TCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 |||||| |||| || | ||| |||||||| || ||| ||||| || ||| || | Sbjct 4991464 TCTCTTTCGAGTCGCGGATGTACGTGTCGATCAGCAGCGAGTACATCTCGCTGTGCACAT 4991523 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 | ||||| || || || |||||||| ||||| ||||| || |||||||| || || Sbjct 4991524 TTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCTTCCGTAACCTGCACCTCCTGGC 4991583 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 ||| || || |||||||| ||||| ||||| |||||| ||||| || |||||||||| Sbjct 4991584 TGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGACGCGGCAAAGAAGGCCAGCA 4991643 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTG 133386 |||| |||||| ||||| ||| | ||| |||| ||||||||| | |||||||| Sbjct 4991644 CGTGGGAGATGAAGTGGCGTTCGCT-CGGTTTCAGCGTCTCCCAGTCCTTCATGTCCTTG 4991702 Query 133387 GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||| || ||||| || || ||||| || || || || || Sbjct 4991703 GACAGATCAACCTCTTCCACCGTCCAGAAGGAAGCTTCCGC 4991743 >seq80 Length=1009533 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| ||||| ||||| |||||||| | || |||||| | Sbjct 729423 AAACATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCC 729482 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | || | ||| |||| ||||| || || |||||| | || Sbjct 729483 TTCGGACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 729542 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| |||||||| || | ||||| ||| |||||| Sbjct 729543 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTA 729602 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || |||||| |||| || ||| |||||||||| Sbjct 729603 CAACATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCG 729641 >seq38 Length=1813042 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || |||||| || Sbjct 65775 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 65716 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GA 38359 | || | | | | | || | || |||| ||||| |||||||| |||||| || Sbjct 65715 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAAT-CCCGCCAGA 65657 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| |||||||| || | ||||| || |||||| Sbjct 65656 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTA 65597 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| |||| || ||| |||||||||| Sbjct 65596 CAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCG 65558 >seq82 Length=995134 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || || || |||||||| | || || ||| | | Sbjct 831347 ATGCAGATTTTCGTGAAAACTCTAACCGGAAAGACCATCACGCTGGAGGTTGAGCCATCG 831406 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | | || | || |||| ||||| ||||||||||| | || || Sbjct 831407 GATACGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCA 831465 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| || | |||||||| ||||| || Sbjct 831466 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAA 831525 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| |||| || ||| || | || || Sbjct 831526 CATCCAGAAGGAGTCCACTCTTCATCTGGTTCTCCGTCTGCGTGGTGG 831573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160126871680