Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq80 132 4e-26 seq118 114 1e-20 >seq80 Length=1009533 Score = 132 bits (146), Expect = 4e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| ||||| || || || ||||| |||| || ||| | |||| |||| || Sbjct 729630 ATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATCCTCCAGCTG 729571 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| ||||| || ||||||||||| || || || || || Sbjct 729570 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 729511 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | ||||| || | || || ||||| |||| || |||||||| Sbjct 729510 TGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGGT 729451 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473 | ||||| || || ||||||||| || Sbjct 729450 GAGTGTTTTCACGAAAATCTGCATGTTT 729423 >seq118 Length=660226 Score = 114 bits (126), Expect = 1e-20 Identities = 206/301 (68%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 |||||||| || || || || ||| | ||||||| || ||||| ||| ||||| ||| Sbjct 49267 TTGAATTTACGCTTGCATCCGTCATAGTTCATGTACCGAATTTTGCCAAAGATTTCGCGC 49208 Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771 ||| ||||| | ||||||| | || || ||||||||||||||| | || ||||| Sbjct 49207 TCCTTCCAGCCCTGATCGTGGATACCCGCGATCGACCACATGCAACCGACGTACCCGTTC 49148 Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACT 13831 |||||||| ||||||| |||||| ||||| | ||| || || | | || | Sbjct 49147 GGATCGCGCCCATCCAGACTGTAGCGATCGTTCAGATAGATCGCCGTCTCAAGCGCTTCC 49088 Query 13832 GTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891 |||| | | ||| || | || ||||| ||||| || || | || | |||||| Sbjct 49087 TCGGGCGTTTTCGTCCACTCCAGGATCTTTTTGGCCCAGTACATGCGCAGGAAGCCGTGC 49028 Query 13892 ATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTCG 13951 || ||||| | | | | ||| ||| || | |||||||| |||||| |||| | Sbjct 49027 ATCTTGCCCTCCTTCACCATCTGCAGCTGGGCCGAGTTCCACAGATCGTCATGCGTTTTG 48968 Query 13952 G 13952 | Sbjct 48967 G 48967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396268610313639