Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq24 132 4e-26 seq80 105 5e-18 seq82 98.7 8e-16 seq38 89.7 4e-13 >seq24 Length=2561919 Score = 132 bits (146), Expect = 4e-26 Identities = 223/319 (70%), Gaps = 9/319 (3%) Strand=Plus/Plus Query 8989 AATT-AATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT 9044 |||| ||||||| ||||| || || || || || |||| || | || || || ||| Sbjct 2173545 AATTCAATTAGTGCCGGTCGATCCGAAACCACCAGCTCCACGCTCTGTATCGGTAAGCGT 2173604 Query 9045 -GGAAGTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCC 9103 ||||| |||| ||| |||||| |||| || ||||| || || || || | Sbjct 2173605 TGGAAG----CTCTTCCAAATCCGGATAAGCTATTTTCTCGCAAATAAACTGTGCGATGC 2173660 Query 9104 TGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGT 9163 || || || || || |||||| | || |||||||||||||| || ||||| |||| Sbjct 2173661 GATCACCTTTCTTAACTTCAAAGTTGTTCTCAGAATGATTGAACAGTACTACTCCGACGT 2173720 Query 9164 TACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTA 9223 | |||| ||| ||||| |||| ||||| || ||||| |||||||||| || || || | Sbjct 2173721 TGCCCCGGTAGTCCTCGTCGACGACACCGGCGCCCACATCGATGAAGTTTTTCACGGCCA 2173780 Query 9224 GTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGG 9283 || || || || || | || || ||||| || |||| | || ||| | | ||||| Sbjct 2173781 AACCGGAACGTGGAGCCACCCGGCCATAGCAACCTTCCGGCACCTGGACCTGGATGTCGG 2173840 Query 9284 TCATGACCAGCCCCTTGCC 9302 |||| || ||| ||||| Sbjct 2173841 TCATCACGAGCTGTTTGCC 2173859 >seq80 Length=1009533 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || || ||| | ||| Sbjct 729644 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 729585 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||| ||| Sbjct 729584 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 729525 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||| | || Sbjct 729524 TTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 729465 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 729464 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 729427 >seq82 Length=995134 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| || || || || || || || || | || | || ||| Sbjct 831327 ACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 831268 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | || | ||||||||||| Sbjct 831267 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 831208 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||||| ||| || || ||| Sbjct 831207 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTT 831148 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 831147 CCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| || || || || || || || || | || | || ||| Sbjct 831555 ACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 831496 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | |||| ||||||||||| Sbjct 831495 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGAATTCCCTCCTTGTCCTGG 831436 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||||| ||| || || ||| Sbjct 831435 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTT 831376 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | |||||| || ||||||||||| Sbjct 831375 CCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| || || || || || || || || | || | || ||| Sbjct 831099 ACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 831040 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || ||||| ||||| ||||| | || | ||||||||||| Sbjct 831039 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 830980 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||||| ||| || || ||| Sbjct 830979 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTT 830920 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 830919 CCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| ||| || || || || || || || || | || | || ||| Sbjct 830871 ACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCC 830812 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | || | ||||||||||| Sbjct 830811 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGG 830752 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | || ||||||| || || || ||| Sbjct 830751 ATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGACCTCCAGGGTGATGGTCTTT 830692 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| |||||| || ||||||||||| Sbjct 830691 CCGGTCAGAGTTTTCACGAAAATCTGCAT 830663 >seq38 Length=1813042 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || ||||| || || || | || Sbjct 65555 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGG 65614 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | || | |||||| Sbjct 65615 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 65674 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 65675 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 65734 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 65735 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 65776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380928189293721