Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq24 268 2e-66 seq3 168 1e-36 seq2 100 5e-16 >seq24 Length=2561919 Score = 268 bits (296), Expect = 2e-66 Identities = 872/1325 (66%), Gaps = 66/1325 (5%) Strand=Plus/Minus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || ||| |||| || | |||||| || || || | ||| | ||| | ||||| ||| || Sbjct 1154363 AGATGATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGAC 1154304 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||| || ||||| || ||||| ||||| ||| || || ||||| Sbjct 1154303 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATT 1154244 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || |||| ||| || || | | ||||||| |||| | | ||| ||| Sbjct 1154243 GGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCC 1154184 Query 213081 CAGTCCCATCTGCCAGACAGGTCC-TCG--TCCTTCACGTTCCACATGTCAAACTGCAAG 213137 |||| ||| ||| ||| ||| ||||| ||||||||| || |||||| Sbjct 1154183 CAGTTCCA---------CAGATCCGTCGGTTCCTT---GTTCCACATCTCGTACTGCAGA 1154136 Query 213138 ATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTT-GGCCAG 213196 ||||| |||||||| |||||||||| ||| | ||| ||||||| ||| ||||| Sbjct 1154135 ATGCCCTTGCTCACCGGGCTGCCCTCGTACGTCTCGTACGGGCCAT-CTCGAGCGGCCAA 1154077 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 ||| ||| ||| | ||| || |||||||||||||||| ||||| | | || ||||| Sbjct 1154076 CTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTT 1154017 Query 213257 CTTGGCCTCTGGGGA--CGT---GA-AGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 | |||||| | ||| || || |||| | ||| ||| |||| |||| Sbjct 1154016 TTGAGCCTCTTCGCTTTCGTACGGATAGCGCATTAGGATG------AACGCATCGGCCAT 1153963 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTC 213367 ||||| || ||||| ||||| || ||||| | || || || ||| ||| |||| Sbjct 1153962 GCCCTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTT--AGC-CTCCGG 1153906 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGAC 213427 || ||| || | ||| || ||||| ||||| || ||||| || | || | ||| Sbjct 1153905 CACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAGCGAC 1153846 Query 213428 ATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGC 213487 | ||| | | | | | |||| | | || |||||| || ||| Sbjct 1153845 TTCCTTCAGCT--TTGCAAAGTCATACGTTTTATCT-TGCTTTACAAACATGTTCAAGGC 1153789 Query 213488 GATGCTGGCCAGGTTGCAAACGGCCACCTC---CTGAGAGTCTGTGTACTCCATGATCTC 213544 ||| |||||| ||||| || || ||||| || || | |||||||| || || Sbjct 1153788 GATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGAC---GAGTACTCCACAATTTC 1153732 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTG-CGTTGG 213603 ||||||| |||| ||| ||||||||| | ||||| ||||| ||||| || | | Sbjct 1153731 AGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTG 1153674 Query 213604 CA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGG 213662 || | ||||||||| |||||||| || ||||| || | ||| || | | ||| Sbjct 1153673 CAAGCATCCTTGTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCA 1153614 Query 213663 CTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTG 213721 ||| || | |||| ||||| ||| |||| | | ||| | | | |||||||| Sbjct 1153613 AACCACAGAT-CCTGCGCCTTCACCTGCCGCATAA-AGCGACCCTCTTT--CTCGTACTC 1153558 Query 213722 TTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGACAGGA-TG 213777 ||| |||| | ||| || | ||||||| ||||| || || ||||| || Sbjct 1153557 CGTGTACAGCTTCTCGAACTCTTCGCCCCAGG---TGTCCGATAGACCGGGACAATCGTG 1153501 Query 213778 CGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGG 213836 |||| ||||| |||||||| ||| | ||| || | || ||||||||||||||| Sbjct 1153500 CGGG-CACATCAGGCTCCACATTTCGTTCGCCTCC-ACACGCTTCATGAACAGGTCCGGT 1153443 Query 213837 ACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGC 213896 | |||||| ||| |||| ||||| | | ||| ||| |||| |||||| | Sbjct 1153442 ATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCAGTGTTTTTCTTC 1153383 Query 213897 AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCC 213956 ||||| ||||| || || || || | ||||| ||||| | |||||||| || || || Sbjct 1153382 AGATCGAGAAACTCGAATATATCGCCATGCCAGGGCTCGAGATAGATGGCGAATGCTCCA 1153323 Query 213957 GGCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACG 214013 |||| | ||||| ||||| || || || ||| ||||| ||| ||| || | Sbjct 1153322 GGCCGCTTGTTGCCACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATC 1153263 Query 214014 GGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGG 214073 || ||||| ||||| || ||||| || || | || |||| || || | | Sbjct 1153262 GGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCGCGGATA 1153203 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 | || | || || ||||||||||| |||| || || | |||||| || ||| Sbjct 1153202 CAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGT 1153143 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || |||||| | ||||| || || | | | ||| || ||| ||| ||| ||| Sbjct 1153142 GTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAACAGGACGAAAGC 1153083 Query 214194 TGGGG 214198 ||||| Sbjct 1153082 TGGGG 1153078 >seq3 Length=6534354 Score = 168 bits (186), Expect = 1e-36 Identities = 286/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | |||| || || |||| ||||| | ||||| || ||||||||| | Sbjct 4990931 CAGCAAGCGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCGAG 4990990 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | ||| |||| ||||| || || ||||||| ||| ||| |||| || || | | Sbjct 4990991 CATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGCACCGCATCGCGGAT 4991050 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| || || || || | ||| | |||| | | || ||| Sbjct 4991051 GATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGA---ACATCAGGCA 4991107 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| |||||||| || ||| ||| |||| |||||| ||| || Sbjct 4991108 GGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCC 4991167 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || |||||||| || || ||||| || ||||||||| Sbjct 4991168 CGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGAT 4991227 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || ||||| || || || ||| || || || |||||| ||||| Sbjct 4991228 ACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCTCGAGAT 4991287 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||| ||||||||||| |||||| |||| | ||| |||| ||| || ||||| Sbjct 4991288 CCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCAGCGTTTCGATGGC 4991341 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||||||| || || || |||||||| ||||||||| | || || Sbjct 4991504 GTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCTTC 4991563 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||||| || | ||| | |||| ||||||||| || || || || || || Sbjct 4991564 CGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGA 4991623 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || ||||||||||| || || || | ||| ||||| ||| | | | || | | Sbjct 4991624 CGCGGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGTTCGCTCGGTTTCAGCGTCTC 4991683 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| ||| | ||| ||| ||| || || |||||||| ||||||||||| || Sbjct 4991684 CCAGTCCTTCATGTCCTTGGACAGATCAACCTCTTCCACCGTCCAGAAGGAAGC 4991737 >seq2 Length=7818334 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| |||||||||| || |||||| || || || ||| ||||| Sbjct 6426553 CTTCAGCTCCTTCACCCGCTCCTCCAGCTTCGAGATGCGCTCGAGCTTCCGCTTCCGGCA 6426612 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || ||| ||||||||| ||||| Sbjct 6426613 CTTGGAGGCGGCGACCCGGTTCCGCAGCCGCTTGCGCTCCAGCTTGATGCGCTCCTGCGA 6426672 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 6426673 CTCCATGTCGATCGG 6426687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931509197287680