Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 178 2e-39 seq3 132 9e-26 >seq24 Length=2561919 Score = 178 bits (196), Expect = 2e-39 Identities = 522/791 (66%), Gaps = 19/791 (2%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| || || || || ||||| ||||| | |||| | || || || || | Sbjct 1153782 GGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATTTCAGTGCACAA 1153723 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || |||||||| || | | | || ||| || |||||| ||| ||||| Sbjct 1153722 GTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTT 1153663 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || |||| || |||| ||| | | | ||| ||| || || Sbjct 1153662 GTACAGCATGTACGGTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCACAGATC 1153603 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || ||||| || | | | |||||| ||| | ||| | || || ||| Sbjct 1153602 -CTGCGCCTTCACCTGCCGCATAAAGCGACCCTCTTTCT---CGTACTCCGTGTACAGCT 1153547 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGA 222010 | || |||| ||| || | | || || || ||||| | ||||| |||||||| Sbjct 1153546 TCTCGAACTCTTCGCCCCAGGTGTCCGATAGACCGGGACAATCGTGCGGG-CACATCAGG 1153488 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| | ||| | | || | || |||||| |||||||| |||||||| || | | Sbjct 1153487 CTCCACATTTCGTTCGCCTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAA 1153428 Query 222071 AAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | || ||| | ||||||| ||| |||||||| ||||||| | ||||| Sbjct 1153427 AACATGTCCC--GTGCGCGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACT 1153370 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || || || | ||||| ||||| ||||||| ||| | || || || |||||||||| Sbjct 1153369 CGAATATATCGCCATGCCAGGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGC 1153310 Query 222189 CACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 |||||||||| || || || | |||| ||| ||| || |||| ||||| |||| Sbjct 1153309 CACCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGT 1153250 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA--G 222305 | || ||||| ||||| ||||||| || || | || ||| | ||| Sbjct 1153249 TTGAAATCCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCGC---GGATACAGTGCACGT 1153193 Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 || ||||| |||||||| || || || | |||||| ||| || ||||| || Sbjct 1153192 TCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGA 1153133 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT-GAGATTTG 222424 ||||||| || || || | | ||| ||| ||||| ||||| | || | || Sbjct 1153132 TGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAACAGGACGAAAGCTGGGGACGCT 1153073 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | | | | | || ||||| || || |||||| ||||| || | | |||| |||| Sbjct 1153072 GCGTAGCCGCCG-CAAACATAGTTGGCGAGGCGTGGGTAAAATAACGCTCGGACAGCAGA 1153014 Query 222485 TCGTACGTCTC 222495 | ||| ||||| Sbjct 1153013 TTGTAGGTCTC 1153003 >seq3 Length=6534354 Score = 132 bits (146), Expect = 9e-26 Identities = 186/260 (72%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 |||||| || ||||| ||||||||| | || || | |||||||||||| | Sbjct 4991359 AGAGAGTTC--CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGAGGAAGGCGGACT 4991302 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| |||| |||||| ||| ||| || | |||||||||||| | || || || | Sbjct 4991301 GGGCGCTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCG 4991242 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 |||| || ||||| ||||| ||||||||| || || || ||||||||||| ||| || Sbjct 4991241 CTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGGCTGAAGAAGC 4991182 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || ||||| || || ||| || |||||||| ||| | ||||| || || | Sbjct 4991181 GTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTGC 4991122 Query 26015 ACAGAGATTTTGCCTGCCTG 26034 || | || |||||||||||| Sbjct 4991121 ACTGCGACTTTGCCTGCCTG 4991102 Score = 118 bits (130), Expect = 2e-21 Identities = 166/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCC 25569 |||||| | |||||| |||||||| ||||||||||| | | |||| | |||| | || Sbjct 4991729 CTGGACGGTGGAAGAGGTTGATCTGTCCAAGGACATGAAGGACTGGGAGACGCTGAAACC 4991670 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | ||| | || || || ||||| |||| |||||||| || || || ||||| Sbjct 4991669 GAG--CGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCCGCGTCCGACGGTATC 4991612 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGT 25687 ||||||||||||||| || | |||| | ||| |||||| |||| || || | Sbjct 4991611 GTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTACG--GAAGCGCGCT 4991554 Query 25688 GTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 | |||||||| |||||||| || || |||||||||||| ||| |||| Sbjct 4991553 GCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTA 4991505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821265394880