Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq82 96.9 2e-14 seq1183 87.8 1e-11 seq24 86.0 4e-11 >seq82 Length=995134 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || || || | ||||| || | || || Sbjct 831112 ACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 831053 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 831052 GCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 830993 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | || | || || | Sbjct 830992 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA-CCTCCA 830934 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| ||||| || |||||||| || Sbjct 830933 GCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTG 830894 >seq1183 Length=6797 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| || || || | || || ||||||||| | || || || | || || || Sbjct 1118 GATTTTTCCTCGCCTAACGTAGCGAAAGAAATGCATGTCGGTCATTTACGTTCGACCATC 1177 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 |||||||| || ||||| || | | |||| | ||| || || | | || || Sbjct 1178 ATTGGTGATTCAATTTGTCGATTTTTGGAATATCTCGGACACGATGTGCTTCGTATTAAC 1237 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| || || |||||||| |||||||||||||||||||| Sbjct 1238 CATATCGGAGACTGGGGAACGCAATTTGGTATGTTAATTGC 1278 >seq24 Length=2561919 Score = 86.0 bits (94), Expect = 4e-11 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 || ||||| || ||||||||||| ||||||||| | |||||||| || |||| ||| Sbjct 217659 GATGAAGACATCAAAAAAGCTTACCGAAAATTAGCACTAAAATATCACCCAGACAAAAAC 217600 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTT-TC 299232 ||| |||| || || || ||||||||| || | | | || || | | | || || Sbjct 217599 AAATCACCTGGGGCAGAGGAGAAGTTTAAAGAAGTTGCTGAAGCATA-CGAAGTGTTGTC 217541 Query 299233 AGATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAA 299283 ||| | ||| ||| | |||||||||||||| ||||| |||||||| Sbjct 217540 CGATAAGAAGAAACGTGAAATGTATGATAAATTTGGTGAAGATGGATTAAA 217490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268092252134996