Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 >seq3 Length=6534354 Score = 111 bits (122), Expect = 2e-19 Identities = 340/521 (65%), Gaps = 6/521 (1%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || || || || ||||| || || || || || | ||| | |||||| ||||| Sbjct 5694309 CCCGTTGCGATCACGAAATCTTCCGGCCGCTCCTGCTGCATCATGAGCCACATCGCCTCT 5694368 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || ||||| | || || ||||||||||| | || ||||| || || | | | Sbjct 5694369 ACGTAATCCTTCGCGTGGCCCCAGTCACGCTTCGAGTCGAGATTGCCCAGCTCCAGGTAC 5694428 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTT--AATGCTCTTGTAATCTTACGAGTTACAAAAG 47965 || |||| || || || ||| | | | || || || || || || ||| Sbjct 5694429 TCCTGCTGGCCGAGCGAAAT--CTTGGCCACCGAGCGGGTGATTTTGCGCGTCACGAAAT 5694486 Query 47966 TTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGT 48025 | || || || | || || || ||||| || || || || | ||||| |||| ||| Sbjct 5694487 TCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGCGAACATATCGT 5694546 Query 48026 ATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACAC-CATAAGGA 48084 | | ||| |||||||| | || ||||||||||| || | | ||| |||| | || || Sbjct 5694547 ACGCTTCGCGATAGTTGATCACAATCCAGTACCCGTACA-TCTTGGCACACGCGTACGGC 5694605 Query 48085 GAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGT 48144 || || |||||||| || || | || |||| || ||||| |||||| || || || Sbjct 5694606 GAGCGGGGATAGAACGGGGTCTTTTCGTTCTGGGGCGTCTCCGCCACCTTGCCGTACAGC 5694665 Query 48145 TCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCC 48204 || || ||||| || |||| || ||| | ||| | | | | ||||| || Sbjct 5694666 TCGGACGTCGATGCCTGGTAGAAGCGGACCGTCCGCTCCTGCCCCACCGTACGGATGGCA 5694725 Query 48205 TCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCAAAC 48264 || |||| | ||| || || | ||||| || | || |||||| || || ||| Sbjct 5694726 TCGAGCAGCCGCAGCGTACCGACCGCATCCACCTCGGCCGTGTACTCGCTCAGATCGAAC 5694785 Query 48265 GAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 |||| ||| || || ||||| || | ||||| || || || Sbjct 5694786 GAAATCTTCACGTGGCTCTGGGCGGCCAGATTGTATATTTC 5694826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665477538035640