Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 132 6e-25 seq3 132 6e-25 seq15 123 3e-22 seq24 114 2e-19 seq121 104 3e-16 seq9 104 3e-16 >seq8 Length=3782947 Score = 132 bits (146), Expect = 6e-25 Identities = 245/351 (70%), Gaps = 10/351 (3%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953 |||||| || || ||| || || |||| |||| || ||||| || |||| || || Sbjct 1162105 GGGTCCCCCGGGTGTGGGTAAAACGACGACCATCCTCTGCCTGGCACGCATCCTGCTCGG 1162046 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 || | | ||| ||||||||||||||| || ||||| || ||||||| || |||| | Sbjct 1162045 GCCCAACTTCCG-CGAGGCCGTGCTCGAGCTGAACGCTTCCAACGAGCGTGGTATCGATG 1161987 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGG-ATCGACCTGCCGCCCGGACG 1574071 | || |||| | ||||| || | || ||| | || ||||| | ||| || Sbjct 1161986 TGGTACGCAGCAAGATCAAAATGTTTGCGCAACAGAAGGTAACG--CTGCCCCGCGGCCG 1161929 Query 1574072 CCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCT 1574131 |||||| | | ||||| ||||| || ||| || | ||| || |||||||||||| || Sbjct 1161928 GCACAAGATTGTAATCCTGGACGAAGCGGACAGCATGACGGAGGGGGCCCAGCAGGCGCT 1161869 Query 1574132 GCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTC 1574191 |||| || ||||||| | | |||||| ||||||||||| || || ||||| ||| Sbjct 1161868 GCGGCGAACGATGGAAATCTATAGCAACACAACGCGCTTTGCGCTAGCCTGCAATACGAG 1161809 Query 1574192 GTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTT 1574240 | | ||||||| | ||| |||||| || || || ||||||||| Sbjct 1161808 CGAAAAGATCATCGAACCGATCC--AGTCGCGGTGTGCGATGCTGCGCTTT 1161760 >seq3 Length=6534354 Score = 132 bits (146), Expect = 6e-25 Identities = 162/221 (73%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| ||||| |||| ||| || ||||| ||||| |||||| Sbjct 4991127 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCCGGCATCAGGCCACGCTTC 4991186 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| ||| ||| || || ||| ||||| ||||| || || || || Sbjct 4991187 TTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAAGAAGATACCCTCAACCGCAGCGAAT 4991246 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | || ||||||| ||||| | | ||| |||| | |||||| |||| |||| Sbjct 4991247 GCCACGACCCGCTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGCGCC 4991300 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||||| ||||| || |||| |||||| ||| |||||||| Sbjct 4991301 CAGTCCGCCTTCCTCTTCACGCACGGCAGCGTTTCGATGGC 4991341 Score = 102 bits (112), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||| ||| ||||| |||||||| |||||||| |||| || | ||||||||||| Sbjct 4990932 AGCAAGCGATCGGCCACAAACTCAATGTACTGCGACATCAGATCACAGTTCATGCCGAGC 4990991 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 | |||||||||| | || ||| ||||| | ||||||| || || ||| |||| Sbjct 4990992 ATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGCACCGCATCGCGGATG 4991051 Query 868931 ATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 |||| | | |||| || ||| ||||| | || || | || | | ||||||| Sbjct 4991052 ATCTCC---GTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGAACATCAGGCAG 4991108 Query 868988 GCAAAGTCGCAGTGCAACCCT 869008 |||||||||||||||| |||| Sbjct 4991109 GCAAAGTCGCAGTGCAGCCCT 4991129 >seq15 Length=2984137 Score = 123 bits (136), Expect = 3e-22 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||||||||||||| ||||||| || || | || || ||| |||| Sbjct 914321 AAGCGCACCGACGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGCACC 914262 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| ||||||| ||||| ||||| || ||||||||| ||||| || | Sbjct 914261 CTGTTCGAGCTGATCCTGGCCGCAAACTATCTGGACATCAAGGGGCTGCTGGACGTGACC 914202 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || || Sbjct 914201 TGCAAAACGGTGGCTAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGTTC 914142 Query 1592288 AACATCAAGTACG 1592300 ||||||||| ||| Sbjct 914141 AACATCAAGAACG 914129 >seq24 Length=2561919 Score = 114 bits (126), Expect = 2e-19 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || ||||| | ||| ||||||| ||||| ||||| || ||||| || Sbjct 1153305 CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGA 1153246 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | | ||| | || ||||| | |||| || | || Sbjct 1153245 AATCCCGTTCGTGCCGGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCC 1153186 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||||||| || || || |||||||| || || ||||||||||||||||| Sbjct 1153185 GATGCCACCGGCCGACTTTGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTC 1153126 Query 1630245 GAT 1630247 || Sbjct 1153125 AAT 1153123 >seq121 Length=635686 Score = 104 bits (114), Expect = 3e-16 Identities = 338/511 (66%), Gaps = 23/511 (5%) Strand=Plus/Minus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| |||| || ||| | |||| |||| ||||||||||| ||| || ||||| Sbjct 499640 AGGTCGATTTTTGAGTCCTCCTCACTGGACGACATCTTGCCGC---CGGCCAGTCCCGGG 499584 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCG 1852158 | | ||| || | || || | ||||| || || || |||||||| | | || Sbjct 499583 ATCATCGGATTCATAAGATGAATACGCTTGGCGTAACCCAGCTGCGGCAGGTATTTCTCG 499524 Query 1852159 CGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 1852218 || |||| || || || ||||| || ||| || ||||||||||| || | || | Sbjct 499523 -GCGAAGGTGAAAATTTTACGCTGATCCACCCCACCGAACTGGGCGTCCACCTTCAGATA 499465 Query 1852219 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTC 1852278 || |||||| || ||||||| | |||||| || | | || ||||| | | || Sbjct 499464 CTCCTCGTCCAGCGCCTGCAGGCCCGGGTACAGGATGCCCGACATCAGCGGAT---GCTC 499408 Query 1852279 CA---TCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGC 1852332 || ||| ||||||| || | |||| || ||| ||||| |||| |||| || Sbjct 499407 CACCTGCTTCACCACCTCCGCTCCCGCCTTCTTGGCGTCGTGC---TGCGTCACGACCGA 499351 Query 1852333 CGCGAGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGC 1852390 | | ||||| | || |||| ||| | || || || ||| || || ||||||| | Sbjct 499350 GGACAACCGGTACACATCCAGCGTGTA--CTCCTTCGACAGCTGATAGTCCGTGCCGCAC 499293 Query 1852391 ACAAACTCGAGTCCGCCCAGCGGCACGCCGA-TGTGCTGGAGCATGGCCTTGATGGCAAA 1852449 || |||| || | |||||||||| |||| | | | ||||| |||||||| | Sbjct 499292 ACGAACTTCAGCTTGTCCAGCGGCACTCCGAGCGAGGT-AAGCATCGCCTTGATAACCGC 499234 Query 1852450 CTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTG 1852509 |||||| | | || | | || ||| |||||||| ||| |||||| || | Sbjct 499233 CTCGTAGTACTTGGTACGTTCCTTGAGCAGCGACCACGGCGCCTTCATGTTGTCCAGATA 499174 Query 1852510 GGCGTGCACGTCGGCAAAGAGGATCTTGACC 1852540 |||||||| || ||||| |||||| | ||| Sbjct 499173 GGCGTGCAGATCTGCAAACAGGATCGTTACC 499143 >seq9 Length=3277154 Score = 104 bits (114), Expect = 3e-16 Identities = 203/292 (70%), Gaps = 15/292 (5%) Strand=Plus/Minus Query 733021 TGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCATGCGC 733079 || |||||| |||| |||| ||| ||| | ||||||| ||| |||| | | || Sbjct 2979703 TGCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATCCGTGT-GCGCTCGGTACGA 2979645 Query 733080 CAGCCCGAGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGG---- 733135 || || | || ||||| | | ||||||||||| || || || || ||| | Sbjct 2979644 ATACCGCAGATCGGAGACAAGTTTGCATCGCGCCACGGACAGAAAGGTAC-GTGCGGTAT 2979586 Query 733136 -CAGCGTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACA 733194 ||| | | ||| ||||||||||| | || | | ||| ||| ||||| |||| Sbjct 2979585 ACAGTAT---CGCCAG-GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGACA 2979533 Query 733195 TCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCC 733254 || | || |||||||||||||||||||| || |||||||| || | || ||||| | Sbjct 2979532 TCATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGAGTGCA 2979473 Query 733255 TCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 ||| ||||||| ||| || | ||||| | |||||||||| |||||| || Sbjct 2979472 TCCAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 2979421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106972854887559