Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq38 152 3e-32 seq82 145 5e-30 seq80 127 1e-24 >seq38 Length=1813042 Score = 152 bits (168), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 65560 CAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 65619 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || ||||| ||| |||| | ||||||||||| Sbjct 65620 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 65679 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || || |||||| |||| ||| ||| Sbjct 65680 CTGGATCTTCGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 65737 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || || ||||||||||| Sbjct 65738 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 65772 >seq82 Length=995134 Score = 145 bits (160), Expect = 5e-30 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| |||||||||||||| ||| |||| |||| Sbjct 830874 AGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 830815 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||||||||||||||| || ||||| ||| |||| | ||||||||||| Sbjct 830814 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 830755 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCG-ATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || | ||| ||||| || | ||| ||| Sbjct 830754 TGGATCTTCGCCTTCAC--ATTCTCAATCGTATCCGATGG-TTCGACCTCCAGGGTGATG 830698 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || || || || || |||||||| Sbjct 830697 GTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830663 Score = 143 bits (158), Expect = 2e-29 Identities = 175/234 (75%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 |||||| || | || | || ||||| |||| ||| ||||||||| ||||||||||| Sbjct 831577 ATTTCCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTC 831518 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 ||| ||| |||| |||| ||||| |||||||||||||||||||| || ||||| ||| | Sbjct 831517 CGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGG 831458 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCG-ATTCATTGGC 34923 ||| | ||||||||||| | || || || || || || |||| || | ||| Sbjct 831457 CGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCAC--ATTCTCAATCGTATCCGATGG- 831401 Query 34924 CTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | || ||||||||||| || || || || || || |||||||| Sbjct 831400 CTCAACCTCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Score = 141 bits (156), Expect = 6e-29 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| ||||||||| |||||||||||||| ||| |||| |||| Sbjct 831102 AGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 831043 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| ||||||||||| || ||||| ||| |||| | ||||||||||| Sbjct 831042 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 830983 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCG-ATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || | ||| ||| || || | || ||| Sbjct 830982 TGGATCTTCGCCTTCAC--ATTCTCAATCGTATCCGATGG-CTCAACCTCCAGCGTGATG 830926 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || || || || || |||||||| Sbjct 830925 GTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 141 bits (156), Expect = 6e-29 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||||||||| |||||||||||||| ||| |||| |||| Sbjct 831330 AGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 831271 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||||||||||||||| || ||||| ||| |||| | ||||||||||| Sbjct 831270 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 831211 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCG-ATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || | ||| ||| || || | || ||| Sbjct 831210 TGGATCTTCGCCTTCAC--ATTCTCAATCGTATCCGATGG-CTCAACCTCCAGCGTGATG 831154 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || || || || || || |||||||| Sbjct 831153 GTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 >seq80 Length=1009533 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| |||||||||||||| ||||| || || |||| |||| Sbjct 729639 CAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATC 729580 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || ||||| ||| | || | || |||||||| Sbjct 729579 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTC 729520 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| || || || || |||| || | |||||| |||| || ||| Sbjct 729519 CTGGATCTTTGCCTTCAC--ATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 729462 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| || || || || ||||||||| Sbjct 729461 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 729426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325684754064713