Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq82 136 8e-27 seq118 89.7 1e-12 >seq82 Length=995134 Score = 136 bits (150), Expect = 8e-27 Identities = 173/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || ||||| || || ||||| || ||||| || | Sbjct 830891 TACCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCG 830832 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || ||||| || ||||| || | || |||||||| | Sbjct 830831 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCG 830772 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| || || ||||| ||||||||||| ||||| | Sbjct 830771 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGA 830712 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 | |||| || || ||||| || |||| || || || || ||||||| |||| ||| Sbjct 830711 CCTCCAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCA-TATTTTAT 830656 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || || || || || ||||| || ||||| || | Sbjct 831119 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCG 831060 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || |||||||| ||||| || | || |||||||| | Sbjct 831059 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCG 831000 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| || || ||||| ||||||||||| || || | Sbjct 830999 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA 830940 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || |||| || || || || |||||||| Sbjct 830939 CCTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || ||||| || || ||||| || ||||| || | Sbjct 831347 TACCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCG 831288 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || ||||| || ||||| || | || |||||||| | Sbjct 831287 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCG 831228 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| || || ||||| ||||||||||| || || | Sbjct 831227 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAA 831168 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || |||| || || || || |||||||| Sbjct 831167 CCTCCAGCGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| | || ||||| || || ||||| || ||||| || || Sbjct 831573 CCACCACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGAC 831514 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || || ||||| || ||||| || | || |||||||| || Sbjct 831513 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGA 831454 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || ||||| || || ||||| ||||||||||| || || || Sbjct 831453 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACC 831394 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || || | || || || || |||||||| Sbjct 831393 TCCAGCGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 >seq118 Length=660226 Score = 89.7 bits (98), Expect = 1e-12 Identities = 200/295 (68%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 || || | ||| |||| |||||| ||| ||||| | | || | |||||| | | Sbjct 48957 CTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAG 49016 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 || || || ||||| | || | | ||||||||||| |||||||| || || ||||| Sbjct 49017 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 49076 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | ||| || || || || ||||| | |||||||| ||| || ||| || || Sbjct 49077 AAAACGCCCGAGGAAGCGCTTGAGACGGCG-ATCTATCTGAACGATCGCTACAGTCTGGA 49135 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGAT-TACATGATC 198549 || ||||| ||||| ||||| ||||| |||||||| | | |||| | | || |||| Sbjct 49136 TGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGA-TCGCGGGTATCCACGATC 49194 Query 198550 GAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | ||||| || | || ||||| || || | || ||||| ||||| || Sbjct 49195 AGGGCTGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGG 49249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981801701027153