Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq118 102 1e-16 >seq118 Length=660226 Score = 102 bits (112), Expect = 1e-16 Identities = 203/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 182995 CTCGAAAAGGCAGAAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGA 183054 || || | ||| |||| |||||| ||| ||||| | | || | |||||| ||| Sbjct 48957 CTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAG 49016 Query 183055 GAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 183114 || || || ||||| | || | || ||||||||||| |||||||| || || ||||| Sbjct 49017 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 49076 Query 183115 AGAACTCCGGAAGATGC-TTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGA 183173 | ||| || || || || ||||| | |||||| ||||| || ||| || || Sbjct 49077 AAAACGCCCGAGGAAGCGCTTGAGACGGCG-ATCTATCTGAACGATCGCTACAGTCTGGA 49135 Query 183174 CGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGAT-TACACGAT- 183231 || ||||| ||||| ||||| ||||| |||||||| | | |||| | | |||||| Sbjct 49136 TGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGA-TCGCGGGTATCCACGATC 49194 Query 183232 AGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTATGA 183284 || || ||||| || | || ||||| || || | || ||||| ||||| Sbjct 49195 AGGGC-TGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGA 49246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903388309818720