Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq24 457 9e-124 seq80 140 3e-28 seq82 129 6e-25 seq38 123 2e-23 seq3 113 4e-20 >seq24 Length=2561919 Score = 457 bits (506), Expect = 9e-124 Identities = 972/1439 (68%), Gaps = 24/1439 (2%) Strand=Plus/Minus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| || ||||||||||| |||||||| | | |||||||| || ||||| | Sbjct 1154363 AGATGATGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGAC 1154304 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || |||| || ||||| || |||||||| | ||| || || || | ||||| ||||| Sbjct 1154303 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATT 1154244 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || | ||||||||| ||||| | |||| | ||| || || ||||| | ||| Sbjct 1154243 GGGGCCAACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCC 1154184 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||| ||| || || |||| | ||||||||| ||||||||||||||||| ||| Sbjct 1154183 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTC 1154124 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 | |||||||||||||||| |||||| || | || |||| || |||||||| Sbjct 1154123 ACCGGGCTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGCT 1154064 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || |||||||||||||| || || ||| |||||| || ||| ||| ||| Sbjct 1154063 TCCAGCGCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCG 1154004 Query 148611 CTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCC 148669 ||||||||||| ||| |||| | | ||||| ||||| | |||||| ||||| | || Sbjct 1154003 CTTTCGTACGG-ATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCC 1153945 Query 148670 AATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGT 148728 || |||| ||| || |||||| | || ||| | | ||||||| ||| | Sbjct 1153944 GATCGGCCTGTGGCGCATATTGGAGCGCTTAGC-CTCCGGCACGGGATAGTAATTGACAT 1153886 Query 148729 CGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAAT 148788 | ||||| |||| ||||||||| || ||| | | | |||| | |||| | Sbjct 1153885 CAATGATTTTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGT 1153826 Query 148789 CGTACTTGTCATC------TACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 | ||| | | ||| ||| | ||| ||||| |||||| ||||| |||||||| | Sbjct 1153825 CATACGTTTTATCTTGCTTTAC-AAACAT--GTTCAAGGCGATCGAGGCCAGATTGCATA 1153769 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGA 148902 | || ||||||| | |||||| || || || | ||||| ||| ||||||| Sbjct 1153768 CCGCTACCTCATCCTTCGACGAGTACTCCACAATTTCAGTGCACAAGTTGGAACATTTGA 1153709 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | ||| | |||| || || || || | ||||| || ||||||||||||||||||| Sbjct 1153708 TGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACG 1153649 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTAT--GAACCGATGCAGGTCCTGCGCGCGCAC 149020 || |||| ||||||||||||| ||| | || || | | ||| |||||||| ||| Sbjct 1153648 GTACGCCGGTTTCCACCTGCGATTCGATGATCGCAAACCA--CAGATCCTGCGCCTTCAC 1153591 Query 149021 TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080 ||| || |||||||||| | |||||| || |||||| ||||||| | ||||| Sbjct 1153590 CTGCCGCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAACTCTTCGCC 1153531 Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140 || || |||||||| || | |||||||||||| || ||||| ||| ||| Sbjct 1153530 CCAGGTGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGC 1153471 Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200 | ||| |||||||| ||||| || || | ||| || ||||| | | ||| || || Sbjct 1153470 CTCCACACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCG 1153411 Query 149201 GCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCA 149260 | || || ||| |||| ||| | ||| | |||||| || | ||||| Sbjct 1153410 GACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCA 1153351 Query 149261 CGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCG 149317 ||||| | || | |||| || || ||| ||||| ||||| ||||||| || Sbjct 1153350 GGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCG 1153291 Query 149318 CACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGA 149377 || | ||||| | || || | ||| || | | || | | | | ||||| || Sbjct 1153290 TGCCGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCC 1153231 Query 149378 GCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTA 149437 | ||| | || ||| || | ||||||||| | |||||||| ||| | | Sbjct 1153230 GGAGATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGA 1153171 Query 149438 CTTTGAGAT--GGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGC 149495 |||||| || || ||| | | | | | ||| |||||||||||| ||||| || Sbjct 1153170 CTTTGAAATTAGGGCGCACTGCTTCAGTGTGTC--GTAGATGCCCTCAATGCTATCTTCG 1153113 Query 149496 TTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATG 149555 |||||||| ||| || || || | | || ||| |||| | ||||| ||||| Sbjct 1153112 GACATGGTCAACAGGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCGCCGCAAACATA 1153053 Query 149556 GTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGG 149615 || || |||||| |||||||| || | || || | ||| | ||||| | | Sbjct 1153052 GTTGGCGAGGCGTGGGTAAAATAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCA 1152993 Query 149616 TCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 || ||||| |||||||||||||| || || |||||||||||||| ||||| || ||||| Sbjct 1152992 TCGATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTC 1152934 >seq80 Length=1009533 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| | ||| ||| | ||||| |||| Sbjct 729630 ATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA-TCCTCCAGCT 729572 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || || |||||||||||||| ||||| Sbjct 729571 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCT 729512 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||| | |||||| | ||||| || || | |||| ||| ||||||| Sbjct 729511 TTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 729452 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||||||||| Sbjct 729451 TGAGTGTTTTCACGAAAATCTGCATG 729426 >seq82 Length=995134 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || || || || || ||| | | | ||||| |||| Sbjct 831094 ATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCCTCCAGCT 831036 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 831035 GCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 830976 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||| || | ||||| || || | |||| ||| || |||| Sbjct 830975 TCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGG 830916 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||| |||||||||||||| Sbjct 830915 TCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || || || || || ||| | | | ||||| |||||||| || Sbjct 830859 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCCTCCAGCTGCTTTCC 830801 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| || |||||||| |||||| ||| Sbjct 830800 GGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTT 830741 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||| || | || || || || | ||||| ||| || ||||||||||| Sbjct 830740 CACATTCTCAATCGTATCCGATGGTTCGACCTCCAGGGTGATGGTCTTTCCGGTCAGAGT 830681 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 830680 TTTCACGAAAATCTGCAT 830663 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || || || || || ||| | | | ||||| |||||||| || Sbjct 831315 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCCTCCAGCTGCTTTCC 831257 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| || |||||||| |||||| ||| Sbjct 831256 GGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTT 831197 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||| || | ||||| || || | |||| ||| || ||||||||||| Sbjct 831196 CACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTCAGAGT 831137 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 831136 TTTCACGAAAATCTGCAT 831119 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || || || || || ||| | | | ||||| |||||||| || Sbjct 831543 GTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCCTCCAGCTGCTTTCC 831485 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || || || || |||||||| |||||| ||| Sbjct 831484 GGCGAAGATCAGACGCTGCTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTCGCCTT 831425 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||| || | ||||| || || | |||| ||| || ||||| ||||| Sbjct 831424 CACATTCTCAATCGTATCCGATGGCTCAACCTCCAGCGTGATGGTCTTTCCGGTTAGAGT 831365 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 831364 TTTCACGAAAATCTGCAT 831347 >seq38 Length=1813042 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || |||| | | | ||||| |||| Sbjct 65569 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCCTCCAGCT 65627 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 65628 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 65687 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || | Sbjct 65688 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCG 65747 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 65748 TGAGGGTTTTGACGAAGATCTGCAT 65772 >seq3 Length=6534354 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||| || ||||||||||| ||||||||||| || || Sbjct 4991102 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 4991161 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||| | ||| | |||| | |||| || ||||| ||||| || || Sbjct 4991162 GAGTCCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATCGCGGCGAAGCTACCGCTGAA 4991221 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| || || || || || | |||||| | || | ||| ||||||| Sbjct 4991222 GAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 4991281 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||| ||||| || ||||| | ||||||||||| Sbjct 4991282 CGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCTCTTCACGCACGGCA 4991328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408551325480