Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20merus_20[genbank_20GCA_5F000473845.2_202014-01-17] 2,027 sequences; 288,048,996 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24 356 2e-93 seq82 95.1 1e-14 seq80 93.3 4e-14 seq38 93.3 4e-14 seq3 87.8 2e-12 >seq24 Length=2561919 Score = 356 bits (394), Expect = 2e-93 Identities = 1008/1532 (66%), Gaps = 26/1532 (2%) Strand=Plus/Minus Query 146890 TGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAA 146949 || || ||||| || |||||||||| || ||| || || || || || ||| | Sbjct 1154357 TGGTTCACCACCTGGAACTCGCCCGACAACACGCGCCTATTGTAAACGTTCGACGTGTAC 1154298 Query 146950 GGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCC 147009 ||||| || || ||||| ||||| | ||||| ||||||| || || ||||| ||| Sbjct 1154297 GGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATTGGGGCC 1154238 Query 147010 ACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCC 147069 | || || ||||| || | ||||| | ||| || |||||||| ||||| | Sbjct 1154237 AACAGCAGCGAATTGCGAATACCGTGCTTTGCGATCTTTTCCTTCAACTCGGCCCAGTTC 1154178 Query 147070 CACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 |||| || || | ||||||||| |||||||| || | || || | || Sbjct 1154177 CACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAGAATGCCCTTGCTCACCGGG 1154118 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGC 147189 ||||| || |||| ||| || || || ||||| |||||||| || || ||| Sbjct 1154117 CTGCCCTCGTACGTCTCGTACGGGCCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGC 1154058 Query 147190 GCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCG 147249 || || ||||| ||||||||| ||||| | ||||| || |||||||| ||| Sbjct 1154057 GCGCCGTAGTAGATGGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCG 1153998 Query 147250 TAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 || || ||| |||| || | || |||||||||| ||||| | |||| ||||| || Sbjct 1153997 TACGG-ATAGCGCATTAGGATGAACGCATCGGCCATGCCCTGCACGCCGATCCCGATCGG 1153939 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAAT 147368 | || ||| |||||| || || | |||||||| ||| |||||| || Sbjct 1153938 CCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGAT 1153879 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 ||||| || || ||| ||| |||| | | || || || | || ||||| || Sbjct 1153878 TTTGTTCAGATTGCGCGTTACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT 1153819 Query 147429 CCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 |||| | || || || ||||| |||||| || ||||||||||| || || Sbjct 1153818 TTTATCTTGCTTTACAAAC--AT--GTTCAAGGCGATCGAGGCCAGATTGCATACCGCTA 1153763 Query 147488 TCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACT 147546 ||| || || || ||||| ||| ||||| | ||||| |||| ||||| ||| Sbjct 1153762 CCTCATCCTTCGACGA-GTACTCCACAATTTCAGTGCACAAGTTGGAACATTTGATGGTG 1153704 Query 147547 CCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCG 147606 || | ||| ||||| || ||||| |||||||| || || ||| | |||||||||||| || Sbjct 1153703 CCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGTACG 1153644 Query 147607 CCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGC 147663 ||||| || || |||| ||| | ||| ||||| ||| |||||||| |||| || Sbjct 1153643 CCGGTTTCCACCTGCGATTCGATGATCGCAAACC---ACAGATCCTGCGCCTTCACCTGC 1153587 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 || | |||| ||||| || |||||| | ||||| | ||| ||||| ||||| || Sbjct 1153586 CGCATAAAGCGACCCTCTTTCTCGTACTCCGTGTACAGCTTCTCGAACTCTTCGCCCCAG 1153527 Query 147724 CAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783 || | || |||||||| | ||||| |||||||| |||||| |||| ||| | Sbjct 1153526 GTGTCCGATAGACCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCC 1153467 Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA 147843 || || ||| ||||| ||||| | |||||| ||||| | | || || || | Sbjct 1153466 ACACGCTTCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACC 1153407 Query 147844 TCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CACGCTATAGATGTCGGCGTGCCAGGG 147902 ||||| ||| |||| |||| || || || | | | || ||| | |||||||| Sbjct 1153406 TCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCGA-ATATATCGCCATGCCAGGG 1153348 Query 147903 TTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCGCAC 147959 || | |||| ||| | || || ||| || || ||||| ||||| | || | Sbjct 1153347 CTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTGCCACCCTGATCGACGTACCGTGC 1153288 Query 147960 CATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATT 148019 | | ||||| | ||||| | ||| || |||| ||| | | | | ||||| ||| Sbjct 1153287 CGTATTGTTGTAGACGCGTAGCATCGGCACCAGACCGTTTGAAATCCCGTTCGTGCCGGA 1153228 Query 148020 GATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTT 148079 ||| | | || || || | ||||||||| | || ||||| ||| | |||| Sbjct 1153227 GATGTACGTTCCCTTCGCGCGGATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTT 1153168 Query 148080 TGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGAC 148139 ||| || ||||| | || ||| ||||||||| || ||||| || || ||| Sbjct 1153167 TGAAATTAGGGCGCACTGCTTCAGTGTGTCGTAGATGCCCTCAATGCTATC--TTCGGAC 1153110 Query 148140 ---GCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGT 148196 | ||| || ||||| || | | || ||| | |||| |||||| || | || Sbjct 1153109 ATGGTCAA-CAGGAAACAGGACGAAAGCTGGGGACGCTGCGTAGCCGCCGCAAACATAGT 1153051 Query 148197 GGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTC 148256 || ||||| ||||| | | || || || ||||| || || | || Sbjct 1153050 TGGCGAGGCGTGGGTAAAATAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATC 1152991 Query 148257 GATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGC 148316 |||||| ||||| || ||||| | || |||||||| ||||||||||| || || ||| | Sbjct 1152990 GATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGAC 1152931 Query 148317 AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTT 148376 | || |||||||| || | ||| ||| | |||||| | || || || || Sbjct 1152930 GATTTTTCCCTTGATCTTCAGCAAGTATGATCGTTCCAAGGTTTTAAAGCCGAAATAGTT 1152871 Query 148377 GTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || | || || | |||||| ||||||| Sbjct 1152870 ATACCCGAAGTCGCGATCGTAAATAATGGCCG 1152839 >seq82 Length=995134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | | ||||| || || ||||| ||||| || ||| Sbjct 831112 ACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 831053 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | |||| |||||||| |||||||| || || || Sbjct 831052 GCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 830993 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 830992 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAG 830933 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||||||||| | |||||||||||| Sbjct 830932 CGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | ||||| || || ||||| ||||| || ||| Sbjct 831340 ACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 831281 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || || || Sbjct 831280 GCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 831221 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 831220 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAG 831161 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||||||||| | |||||||||||| Sbjct 831160 CGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 831119 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | ||||| || || ||||| ||||| || ||| Sbjct 831568 ACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 831509 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || || || Sbjct 831508 GCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGAATTCC 831449 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 831448 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGCTCAACCTCCAG 831389 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || || |||||||| | |||||||||||| Sbjct 831388 CGTGATGGTCTTTCCGGTTAGAGTTTTCACGAAAATCTGCAT 831347 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| ||| | | ||||| || || ||||| ||||| || ||| Sbjct 830884 ACGCAGACGGAGAACCAGATGAAGAGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 830825 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || |||| |||| |||||||| |||||||| || || || Sbjct 830824 GCGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 830765 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | || || || || | Sbjct 830764 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCCGATGGTTCGACCTCCAG 830705 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||||||||| | |||||||||||| Sbjct 830704 GGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 830663 >seq80 Length=1009533 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || || || ||||||||||||||| | || || | Sbjct 729641 CGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA 729582 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| |||||||| || |||||||| || Sbjct 729581 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTG 729522 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | || | || || | ||||| || || | || | Sbjct 729521 TCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 729462 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || || || ||||| | ||||||||||||| Sbjct 729461 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 729426 >seq38 Length=1813042 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| ||| | | | ||||| || || |||||||||||| || || Sbjct 65552 CGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTG 65611 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| |||| |||||||| |||||||| || || || Sbjct 65612 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCC 65671 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || |||| | || | ||||| | ||||| || || | Sbjct 65672 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 65731 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 65732 GTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 65772 >seq3 Length=6534354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 261/397 (66%), Gaps = 7/397 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 ||||| | ||||| |||| |||||| |||| ||| |||| | | |||||| | Sbjct 4991311 AAGGCGGACTGGGCGCTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTC 4991252 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895 ||||||||||| || || || | || || || || || ||||| || || | Sbjct 4991251 GTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGTAGCTTCGCCGCGATCTTCTGG 4991192 Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955 | || | ||| | |||||||| || || ||| |||||| |||||||||||||| Sbjct 4991191 CTGAAGAAGCGTGGCCTGATGCCGGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGAC 4991132 Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTA 47015 ||||| || ||| |||||||| || || | |||| | ||| | || | Sbjct 4991131 GAAGGGCTGCACTGCGACTTTGCCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCG 4991072 Query 47016 AACTCGGA-CACGATCCTGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTT 47074 || ||| | || | ||| || | | || |||||| ||||| ||||||| | Sbjct 4991071 AA---GGAGCGCGTGACGGAG-ATCATCCGCGATGCGGTGCTGATCGAGCAGGAGTTCCT 4991016 Query 47075 TACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCT-ATGTGCGAATATA 47133 || ||| ||||| || | |||| ||||||||| | ||| |||| | || | Sbjct 4991015 GACGAAGGCACTGCCGGTGGATATGCTCGGCATGAACTGTGA-TCTGATGTCGCAGTACA 4990957 Query 47134 TTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 47170 ||||||||||||| ||||| || || | |||| || Sbjct 4990956 TTGAGTTTGTGGCCGATCGCTTGCTGCTCGAGCTGGG 4990920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599123863720